Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Apr 30, 2018 BTH_I1403 Burkholderia thailandensis E264; ATCC 700388 New gene name: scmR. New product name: secondary metabolite regulator, ScmR. New product name confidence: Class 1. New PubMed ID: 28320949. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1476 Burkholderia thailandensis E264; ATCC 700388 New product name: dTDP-Rha 4-epimerase. New PubMed ID: 21640586. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1472 Burkholderia thailandensis E264; ATCC 700388 New PubMed ID: 21640586. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS22210 Burkholderia cenocepacia K56-2Valvano New gene name: arnT. New product name: 4-amino-4-deoxy-L-arabinose transferase ArnT. New product name confidence: Class 2. New subcellular localization: Cytoplasmic membrane (Class 2). New subcellular localization evidence code (ECO): ECO:0000314. New subcellular localization cross-ref: BGD:BCAL1929. New subcellular localization PMID: 26030265. New PubMed ID: 22742453. New PubMed ID: 26515403. New PubMed ID: 26030265. New PubMed ID: 11535604. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1929. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS22195 Burkholderia cenocepacia K56-2Valvano New gene name: arnC. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1932. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS22200 Burkholderia cenocepacia K56-2Valvano New gene name: arnB. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1931. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS22185 Burkholderia cenocepacia K56-2Valvano New gene name: arnA2. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1934. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS22190 Burkholderia cenocepacia K56-2Valvano New gene name: arnA1. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1933. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS22180 Burkholderia cenocepacia K56-2Valvano New product name confidence: Class 2. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1935. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL1929 Burkholderia cenocepacia J2315 New product name: 4-amino-4-deoxy-L-arabinose transferase ArnT. New product name confidence: Class 1. New subcellular localization: Cytoplasmic membrane (Class 1). New subcellular localization evidence code (ECO): ECO:0000314. New subcellular localization PMID: 26030265. New PubMed ID: 22742453. New PubMed ID: 26515403. New PubMed ID: 26030265. New PubMed ID: 11535604. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL1932 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL1931 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL1934 Burkholderia cenocepacia J2315 New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL1933 Burkholderia cenocepacia J2315 New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL1935 Burkholderia cenocepacia J2315 New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS27075 Burkholderia cenocepacia K56-2Valvano New gene name: msbA. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 8809774. New comment: .Annotation transferred from: UniProtKB:P60752. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS03200 Burkholderia cenocepacia K56-2Valvano New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: BGD:BCAL0788. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS04580 Burkholderia cenocepacia K56-2Valvano New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: BGD:BCAL0508. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS01875 Burkholderia cenocepacia K56-2Valvano New gene name: lpxK. New product name: LpxK. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P27300. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS17050 Burkholderia lata 383 New gene name: lpxH. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P43341. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21450 Burkholderia cenocepacia K56-2Valvano New gene name: lpxB. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P10441. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21435 Burkholderia cenocepacia K56-2Valvano New gene name: lpxD. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P21645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS00665 Burkholderia cenocepacia K56-2Valvano New gene name: lpxC. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A725. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21445 Burkholderia cenocepacia K56-2Valvano New gene name: lpxA. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A722. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2408 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 8809774. Annotation transferred from: UniProtKB:P60752. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0788 Burkholderia cenocepacia J2315 New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0508 Burkholderia cenocepacia J2315 New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2759 Burkholderia cenocepacia J2315 New gene name: lpxK. New product name: LpxK. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P27300. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2154 Burkholderia cenocepacia J2315 New gene name: lpxH. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P43341. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2078 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P10441. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2081 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P21645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3455 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A725. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2079 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A722. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS03910 Burkholderia ambifaria AMMD New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BamMC406_0785 Burkholderia ambifaria MC40-6 New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 CH72_RS04090 Burkholderia ambifaria AMMD New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1469 Burkholderia thailandensis E264; ATCC 700388 New gene name: rmlB. New product name: dTDP-d-glucose 4,6-dehydratase RmlB. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1470 Burkholderia thailandensis E264; ATCC 700388 New gene name: rmlA. New product name: glucose-1-phosphate thymidylyltransferase RmlA. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1471 Burkholderia thailandensis E264; ATCC 700388 New gene name: rmlC. New product name: dTDP-6-deoxy-d-xylo-4-hexulose 3,5-epimerase RmlC. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1472 Burkholderia thailandensis E264; ATCC 700388 New gene name: rmlD. New product name: dTDP-6-deoxy-l-lyxo-4-hexulose reductase RmlD. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1476 Burkholderia thailandensis E264; ATCC 700388 New gene name: wbiB. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29050 Burkholderia cenocepacia K56-2Valvano New gene name: rmlB. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1469. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29055 Burkholderia cenocepacia K56-2Valvano New gene name: rmlA. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD::BTH_I1470. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29060 Burkholderia cenocepacia K56-2Valvano New gene name: rmlC. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BGD:BTH_I1471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29065 Burkholderia cenocepacia K56-2Valvano New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BGD:BTH_I1472. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29070 Burkholderia cenocepacia K56-2Valvano New gene name: wzm. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3131. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29075 Burkholderia cenocepacia K56-2Valvano New gene name: wzt. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3130. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29080 Burkholderia cenocepacia K56-2Valvano New gene name: vioA. New product name: nucleotide sugar aminotransferase VioA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3129. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29085 Burkholderia cenocepacia K56-2Valvano New gene name: wbxF. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3128. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29090 Burkholderia cenocepacia K56-2Valvano New product name: WbxE. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster. New comment: B cenocepacia J2315, but not K56-2, is O-antigen deficient due to a transposon insertion in this gene..Annotation transferred from: BGD:BCAL3125. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29095 Burkholderia cenocepacia K56-2Valvano New gene name: wbxD. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3124. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29100 Burkholderia cenocepacia K56-2Valvano New gene name: wbxC. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3123. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29105 Burkholderia cenocepacia K56-2Valvano New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3122. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29110 Burkholderia cenocepacia K56-2Valvano New product name confidence: Class 1. New PubMed ID: 26116716. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3121. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29115 Burkholderia cenocepacia K56-2Valvano New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3120. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29120 Burkholderia cenocepacia K56-2Valvano New product name confidence: Class 1. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3119. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29125 Burkholderia cenocepacia K56-2Valvano New gene name: wecA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3118. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29130 Burkholderia cenocepacia K56-2Valvano New gene name: galE. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3117. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29135 Burkholderia cenocepacia K56-2Valvano New gene name: wbxB. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3116. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29140 Burkholderia cenocepacia K56-2Valvano New gene name: wbxA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3115. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29145 Burkholderia cenocepacia K56-2Valvano New gene name: wzx. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3114. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29160 Burkholderia cenocepacia K56-2Valvano New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New gene name synonym: wbxY. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate.Annotation transferred from: UniProtKB:E9NYT3. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3135 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1469. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3134 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BD:BTH_I1470. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3133 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3132 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1472. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3131 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3130 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3129 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3128 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3125 New product name: pseudogene (WbxB). New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster. New comment: B cenocepacia J2315, but not K56-2, is O-antigen deficient due to a transposon insertion in this gene. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3124 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3123 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3122 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3121 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 26116716. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3120 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3119 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3118 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3117 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3116 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3115 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3114 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3111 Burkholderia cenocepacia J2315 New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate.Annotation transferred from: UniProtKB:E9NYT3. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3110 Burkholderia cenocepacia J2315 New product name: WaaA. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P0AC75. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL2795 Burkholderia pseudomallei K96243 New product name synonym: Sedoheptulose 7-phosphate isomerase. New PubMed ID: 19923728. New PubMed ID: 20447408. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0967 Burkholderia cenocepacia J2315 New product name: heptosyltransferase II WaaF. New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3112 Burkholderia cenocepacia J2315 New product name: heptosyltransferase I WaaC. New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2409 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2408 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2407 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2406 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2405 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2404 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2403 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2402 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3310 Burkholderia cenocepacia J2315 New gene name: bcnB. New product name: BcnB. New product name confidence: Class 1. New PubMed ID: 28292982. New comment: Miguel Valvano, Queen's University of Belfast
Apr 30, 2018 BCAL3311 Burkholderia cenocepacia J2315 New gene name: bcnA. New product name: BcnA. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000279. New subcellular localization PMID: 28292982. New PubMed ID: 28292982. New comment: Miguel Valvano, Queen's University of Belfast
Apr 30, 2018 BCAM0049 Burkholderia cenocepacia J2315 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS08900 Burkholderia dolosa AU0158 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS17810 Burkholderia dolosa AU0158 New gene name: fixJ. New product name: FixJ. New product name synonym: two-component response regulator FixJ. New product name confidence: Class 1. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P10958. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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