Strain |
Burkholderia cenocepacia K56-2Valvano
GCF_000333155.2|latest |
Locus Tag |
BURCENK562V_RS22200
|
NCBI Old Locus Tag | BURCENK562V_C1272 |
Name |
arnB
|
Replicon | ctg7180000002937 |
Genomic location | 433043 - 434194 (- strand) |
Comment | In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. |
RefSeq | WP_006482866.1 |
GI | 493528849 |
GI | 493528849 |
NCBI Locus Tag | BURCENK562V_RS22200 |
NCBI Old Locus Tag | BURCENK562V_C1272 |
RefSeq | WP_006482866.1 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
aminotransferase DegT
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -2.22 |
Kyte-Doolittle Hydrophobicity Value | -0.027 |
Molecular Weight (kDa) | 41849.5 |
Isoelectric Point (pI) | 6.52 |
Individual Mappings | |
Additional evidence for subcellular localization |
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
4LC3 | TRANSFERASE | 06/21/13 | X-ray crystal structure of a putative UDP-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase from Burkholderia cenocepacia | BURKHOLDERIA CENOCEPACIA | 1.6 | X-RAY DIFFRACTION | 100.0 |
Burkholderia Ortholog Group |
BG001693 (653 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: BURCENK562V_RS22200
Search term: arnB
Search term: aminotransferase DegT
|
PubMed ID: 22742453
|
A putative gene cluster for aminoarabinose biosynthesis is essential for Burkholderia cenocepacia viability.
Ortega XP, Cardona ST, Brown AR, Loutet SA, Flannagan RS, Campopiano DJ, Govan JR, Valvano MA
J Bacteriol 2007 May;189(9):3639-44
PubMed ID: 17337576
|
Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS.
Wong YC, Abd El Ghany M, Naeem R, Lee KW, Tan YC, Pain A, Nathan S
Front Microbiol 2016;7:1288
PubMed ID: 27597847
|