| Aug 1, 2008 |
Bcen2424_1644
|
|
New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 94% identity to ornibactin receptor precursor [B. cenocepacia K56-2]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1164
|
|
New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 94% identity to ornibactin receptor precursor [B. cenocepacia K56-2]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4790
|
|
New product name: ornibactin receptor precursor, OrbA. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 91% identity to ornibactin receptor precursor [B. cenocepacia K56-2]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11083764.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1642
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 94% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1162
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 94% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4788
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 90% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1539
|
|
New product name: ornibactin biosynthesis protein, OrbK. New product name confidence: Class 3. New homology: 86% identity to ornibactin biosynthesis protein, OrbK[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1641
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 95% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1161
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 95% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4787
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 92% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1538
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbJ. New product name confidence: Class 3. New homology: 91% identity to ornibactin biosynthesis non-ribosomal peptid, OrbJ[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1640
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 96% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1160
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 96% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4786
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 93% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1537
|
|
New product name: ornibactin biosynthesis non-ribosomal peptide, OrbI. New product name confidence: Class 3. New homology: 91% identity to ornibactin biosynthesis non-ribosomal peptide, OrbI[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1639
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 98% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1159
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 98% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4785
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 97% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1536
|
|
New product name: ornibactin biosynthesis ABC transport protein, OrbE. New product name confidence: Class 3. New homology: 95% identity to ornibactin biosynthesis ABC transport protein, OrbE[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Jan 14, 2010 |
Bth_I1158
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Nucleoside kinase. New product name confidence: Class 2. New evidence reference (PMID): 19021762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1539
|
Burkholderia pseudomallei
K96243 |
New product name: needle length control protein BsaU (T3SS-3). New gene name synonym: sctP. New PubMed ID: 28664152. New PubMed ID: 10944190. New PubMed ID: 16714590. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. BsaU is homologous to InvJ from Salmonella which is the molecular ruler which determines the length of the T3SS needle. (PMID: 10944190).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1538
|
Burkholderia mallei
ATCC 23344 |
New product name: needle length control protein BsaU (T3SS-3). New gene name synonym: sctP. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 10944190. New PubMed ID: 16714590. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1539.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2408
|
Burkholderia cenocepacia
J2315 |
New product name: MsbA. New pathway: Lipopolysaccharide biosynthesis. New pathway: lipopolysaccharide core region biosynthesis. New GO accession: GO:0009244 [IGC]. New evidence reference (PMID): 19525227.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM1867
|
Burkholderia cenocepacia
J2315 |
New product name: MgtC.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Aug 1, 2008 |
Bcen2424_1643
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1163
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1540
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4789
|
|
New product name: L-ornithine N5-oxygenase. New product name confidence: Class 2. New homology: 51% identity to L-ornithine N5-oxygenase, PvdA[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Jan 29, 2010 |
BCAL1699
|
Burkholderia cenocepacia
J2315 |
New product name: L-ornithine N(5)-oxygenase. New product name confidence: Class 1. New evidence reference (PMID): 10456885.
|
Pamela A. Sokol, University of Calgary
|
| Apr 10, 2015 |
BCAL1699
|
Burkholderia cenocepacia
J2315 |
New product name: L-ornithine 5-monooxygenase.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL2829
|
Burkholderia cenocepacia
J2315 |
New product name: HtrA protease.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0967
|
Burkholderia cenocepacia
J2315 |
New product name: heptosyltransferase II WaaF. New PubMed ID: 19525227. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL3112
|
Burkholderia cenocepacia
J2315 |
New product name: heptosyltransferase I WaaC. New PubMed ID: 19525227. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1525
|
Burkholderia pseudomallei
K96243 |
New product name: guanine nucleotide exchange factor BopE (T3SS-3). New PubMed ID: 18052936. New PubMed ID: 18654761. New PubMed ID: 24626296. New PubMed ID: 17041850. New PubMed ID: 25635268. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1523
|
Burkholderia mallei
ATCC 23344 |
New product name: guanine nucleotide exchange factor BopE (T3SS-3). New product name confidence: Class 2. New PubMed ID: 18052936. New PubMed ID: 18654761. New PubMed ID: 24626296. New PubMed ID: 17041850. New PubMed ID: 25635268. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1525.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAL3378
|
Burkholderia cenocepacia
J2315 |
New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New evidence reference (PMID): 18057135.
|
Literature review. Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta.
|
| Jan 14, 2010 |
Bxe_A2876
|
Burkholderia xenovorans
LB400 |
New product name: Fe2+-dependent oxygenase. New product name confidence: Class 2. New evidence reference (PMID): 19754880.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Aug 1, 2008 |
Bcen2424_4993
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_3374
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_B0677
|
|
New product name: Fe(III)-pyochelin outer membrane receptor precursor. New product name confidence: Class 2. New homology: 60% identity to Fe[III]-pyochelin outer membrane receptor precursor [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 8288523.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Apr 30, 2018 |
BTH_I1476
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: dTDP-Rha 4-epimerase. New PubMed ID: 21640586.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2409
|
Burkholderia cenocepacia
J2315 |
New product name: DnaE. New pathway: Lipopolysaccharide biosynthesis. New pathway: lipopolysaccharide core region biosynthesis. New GO accession: GO:0009244 [IGC]. New evidence reference (PMID): 19525227.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1512
|
Burkholderia pseudomallei
K96243 |
New product name: deubiquitinase TssM. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 24866793. New PubMed ID: 19168747. New PubMed ID: 24866793. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAM0224
|
Burkholderia cenocepacia
J2315 |
New product name: collagen type 1-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: BCAM0224 is a trimeric autotransporter adhesin required for cell adhesion and virulence (PMID:20019083). New PMIDs: 22919579, 20019083.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAL2021
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAL0274
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAM2632
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1542
|
Burkholderia pseudomallei
K96243 |
New product name: chaperone protein BsaR (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16164564. New PubMed ID: 14645290. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. BsaR is homologous to the Salmonella chaperone InvB which has been shown to be required for secretion of the effector proteins SopE and SopA (PMID:14645290). BsaR has been predicted to be the chaperone for BopE using a computational screen for chaperones in B. pseudomallei K96243 (PMID:16164564) but this has not been validated yet.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1541
|
Burkholderia mallei
ATCC 23344 |
New product name: chaperone protein BsaR (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16164564. New PubMed ID: 14645290. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1542.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1523
|
Burkholderia pseudomallei
K96243 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1710b_A056
|
Burkholderia pseudomallei
1710b |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0765
|
Burkholderia mallei
NCTC 10247 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2084
|
Burkholderia mallei
NCTC 10229 |
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1520
|
|
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: CepI. New PubMed ID: 14663096.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL3240
|
Burkholderia cenocepacia
J2315 |
New product name: capsule polysaccharide export ATP-binding protein, CpxA. New gene name synonym: cpxA. New product name confidence: Class 2. New PubMed ID: 15213146. Annotation transferred from: Refseq:NP_283042.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1106A_A202
|
Burkholderia pseudomallei
1106a |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMASAVP1_0599
|
Burkholderia mallei
SAVP1 |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A1666
|
Burkholderia mallei
NCTC 10247 |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_0710
|
Burkholderia mallei
NCTC 10229 |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAM0864
|
Burkholderia cenocepacia
J2315 |
New product name: BceK. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4210.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAM0863
|
Burkholderia cenocepacia
J2315 |
New product name: BceJ. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4209.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAM0862
|
Burkholderia cenocepacia
J2315 |
New product name: BceI. New product name confidence: Class 2. New PubMed ID: 14637140. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4208.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAM0861
|
Burkholderia cenocepacia
J2315 |
New product name: BceH. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4207.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAM0860
|
Burkholderia cenocepacia
J2315 |
New product name: BceG. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4206.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4205
|
Burkholderia vietnamiensis
G4 |
New product name: BceF. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4203
|
Burkholderia vietnamiensis
G4 |
New product name: BceD. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1525
|
Burkholderia mallei
ATCC 23344 |
New product name: BapB (T3SS-3). New product name confidence: Class 2. New PubMed ID: 26624293. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1527.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1527
|
Burkholderia pseudomallei
K96243 |
New product name: BapB (T3SS-3). New product name confidence: Class 1. New PubMed ID: 26624293. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Transcription of bopE and secretion of the BopE protein were increased in the bapB mutant, indicating that BapB is likely to play a role in modulating bopE expression (PMID:26624293).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_3334
|
Burkholderia multivorans
ATCC 17616 |
New product name: ATP-binding cassette subunit of inner membrane heme transporter HmuV. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_4607
|
Burkholderia multivorans
ATCC 17616 |
New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAM1870
|
Burkholderia cenocepacia
J2315 |
New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 100% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL0207
|
Burkholderia cenocepacia
J2315 |
New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 63% identity to HppD[A. hydrophila]. New homology: 57% idenity to HppD[P. fluorescens]. New homology: 32% idenity to HppD[S. avermitilis]. New evidence reference (PMID): 17933889.
|
Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
|
| Apr 30, 2018 |
BCAL1929
|
Burkholderia cenocepacia
J2315 |
New product name: 4-amino-4-deoxy-L-arabinose transferase ArnT. New product name confidence: Class 1. New subcellular localization: Cytoplasmic membrane (Class 1). New subcellular localization evidence code (ECO): ECO:0000314. New subcellular localization PMID: 26030265. New PubMed ID: 22742453. New PubMed ID: 26515403. New PubMed ID: 26030265. New PubMed ID: 11535604. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1283
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: 1,6-Didesmethyltoxoflavin N_Methyltransferase. New product name confidence: Class 1. New PubMed ID: 28665591. New comment: Member of the toxoflavin-like gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSL2795
|
Burkholderia pseudomallei
K96243 |
New product name synonym: Sedoheptulose 7-phosphate isomerase. New PubMed ID: 19923728. New PubMed ID: 20447408. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS05095
|
Burkholderia cenocepacia
K56-2Valvano |
New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment:
. Annotation transferred from: UniProtKB:P76078.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Aug 1, 2008 |
Bcep18194_A4779
|
|
New product name confidence: Class 3. New alternate product name: OrbH. New homology: 96% identity to OrbH[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1530
|
|
New product name confidence: Class 3. New alternate product name: OrbH. New homology: 96% identity to OrbH[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1633
|
|
New product name confidence: Class 3. New alternate product name: OrbH. New homology: 100% identity to OrbH[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1153
|
|
New product name confidence: Class 3. New alternate product name: OrbH. New homology: 100% identity to OrbH[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Apr 30, 2018 |
BCAL2408
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 8809774. Annotation transferred from: UniProtKB:P60752.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22180
|
Burkholderia cenocepacia
K56-2Valvano |
New product name confidence: Class 2. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1935.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL2831
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 23761261. New PubMed ID: 17220310. New comment: .Annotation transferred from: UniProtKB:B4EA13.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAM2738
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 23761261. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL3132
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1472.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL3133
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1471.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL3135
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1469.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL3134
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BD:BTH_I1470.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0752
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2072
|
Burkholderia mallei
NCTC 10229 |
New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1710b_A059
|
Burkholderia pseudomallei
1710b |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1549.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0734
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1549.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2055
|
Burkholderia mallei
NCTC 10229 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1549.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1549
|
|
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1549.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0735
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1548.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2056
|
Burkholderia mallei
NCTC 10229 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1548.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1548
|
|
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1548.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0736
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1547.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2057
|
Burkholderia mallei
NCTC 10229 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1547.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|