Jan 29, 2010 |
BCAS0333
|
Burkholderia cenocepacia
J2315 |
New product name: putative siderophore receptor. New product name confidence: Class 3. Dropped gene name: orbA.
|
Pamela A. Sokol, University of Calgary
|
Jan 29, 2010 |
BCAL1700
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New subcellular localization: Outer Membrane. New subcellular localization confidence: Class 1. New evidence reference (PMID): 10456885. New evidence reference (PMID): 11083760.
|
Pamela A. Sokol, University of Calgary
|
Jan 14, 2010 |
Bth_I1158
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Nucleoside kinase. New product name confidence: Class 2. New evidence reference (PMID): 19021762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 14, 2010 |
Bxe_A2876
|
Burkholderia xenovorans
LB400 |
New product name: Fe2+-dependent oxygenase. New product name confidence: Class 2. New evidence reference (PMID): 19754880.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 14, 2010 |
BCAM2632
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 14, 2010 |
BCAL0274
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 14, 2010 |
BCAL2021
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 14, 2010 |
BCAS0223
|
Burkholderia cenocepacia
J2315 |
New gene name: afcC. New product name: AfcC. New product name confidence: Class 2. New evidence reference (PMID): 9758823.
|
Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
|
Jan 14, 2010 |
BCAS0225
|
Burkholderia cenocepacia
J2315 |
New gene name: shvR. New product name: shiny variant regulator, ShvR. New product name confidence: Class 1. New evidence reference (PMID): 19761612.
|
Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
|
Apr 22, 2009 |
Bxe_A0793
|
Burkholderia xenovorans
LB400 |
New gene name: fusA. New product name confidence: Class 1. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847.
|
Literature review. Geoffrey L. Winsor, Simon Fraser University
|
Apr 22, 2009 |
BCAM2307
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PMID): 16790782.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL3119
|
Burkholderia cenocepacia
J2315 |
New product name: WbiI. New product name confidence: Class 2. New homology: 67.8% identity to whpM[P. aeruginosa PAO1]. New homology: 99% identity to WbiI[accession number AY523838]. New evidence reference (PMID): 15364998.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL1656
|
Burkholderia cenocepacia
J2315 |
New product name: transcription factor SsuR. New product name confidence: Class 1. New evidence reference (PMID): 16997956.
|
Literature review. Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland
|
Apr 22, 2009 |
BCAL0787
|
Burkholderia cenocepacia
J2315 |
New gene name: sigM. New product name: sigma factor 70 SigM. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL1892
|
Burkholderia cenocepacia
J2315 |
New gene name: sigL. New product name: sigma factor 70 SigL. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL0144
|
Burkholderia cenocepacia
J2315 |
New gene name: sigK. New product name: sigma factor 70 SigK. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM1259
|
Burkholderia cenocepacia
J2315 |
New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM2371
|
Burkholderia cenocepacia
J2315 |
New gene name: sigI. New product name: sigma factor 70 sigI. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM0918
|
Burkholderia cenocepacia
J2315 |
New gene name: sigE. New product name: sigma factor 70 sigE. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL0813
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New evidence reference (PMID): 18195023.
|
Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
|
Apr 22, 2009 |
BCAM0005
|
Burkholderia cenocepacia
J2315 |
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM0004
|
Burkholderia cenocepacia
J2315 |
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. cencoepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM1867
|
Burkholderia cenocepacia
J2315 |
New gene name: mgtC. New product name confidence: Class 1. New evidence reference (PMID): 16988222.
|
Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
|
Apr 22, 2009 |
BCAL2829
|
Burkholderia cenocepacia
J2315 |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 1. New evidence reference (PMID): 17220310.
|
Literature review. Valvano, M. A. University of Western Ontario, Ontario
|
Apr 22, 2009 |
BCAL0207
|
Burkholderia cenocepacia
J2315 |
New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 63% identity to HppD[A. hydrophila]. New homology: 57% idenity to HppD[P. fluorescens]. New homology: 32% idenity to HppD[S. avermitilis]. New evidence reference (PMID): 17933889.
|
Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
|
Apr 22, 2009 |
BCAL2739
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL3378
|
Burkholderia cenocepacia
J2315 |
New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New evidence reference (PMID): 18057135.
|
Literature review. Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta.
|
Apr 22, 2009 |
BCAL3486
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM0849
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM2748
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM0001
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfJ. New product name: sigma factor 70 EcfJ. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL1688
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New evidence reference (PMID): 17784978.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM1661
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL1947
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfG. New product name: sigma factor 70 EcfG. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL3151
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfF. New product name: sigma factor 70 EcfF. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL2462
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL2360
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL1369
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL3478
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL2872
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfA2. New product name: EcfA2. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL0998
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfA1. New product name: EcfA1. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAL2686
|
Burkholderia cenocepacia
J2315 |
New product name: transcription factor CysB. New product name confidence: Class 1. New evidence reference (PMID): 16997956.
|
Literature review. Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland
|
Apr 22, 2009 |
BCAM0188
|
Burkholderia cenocepacia
J2315 |
New gene name: cepR2. New product name: CepR2. New product name confidence: Class 1. New evidence reference (PMID): 19201791.
|
Eoin O'Grady, University of Calgary Health Sciences Centre, Calgary, Alberta
|
Apr 22, 2009 |
BCAM1868
|
Burkholderia cenocepacia
J2315 |
New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 99% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM1870
|
Burkholderia cenocepacia
J2315 |
New homology: 90% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056.
|
Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
|
Apr 22, 2009 |
BCAM1870
|
Burkholderia cenocepacia
J2315 |
New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 100% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM0859
|
Burkholderia cenocepacia
J2315 |
New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 92% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM0857
|
Burkholderia cenocepacia
J2315 |
New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 90% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 22, 2009 |
BCAM0379
|
Burkholderia cenocepacia
J2315 |
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 19% identity to RetS [P. aeruginosa]. New evidence reference (PMID): 18316384.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
Apr 22, 2009 |
BCAS0222
|
Burkholderia cenocepacia
J2315 |
New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 94% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
Sep 15, 2008 |
Bcep18194_C7411
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 89% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcep18194_C7399
|
|
New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 35% identity and 55 % similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_C7398
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 37% identity and 56 similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_C6640
|
|
New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New homology: 87% identity to ecfE[B. cenocepacia L2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_B2888
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 79% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcep18194_B2866
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 36% identity and 54 % similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2865
|
|
New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 41% identity and 54% similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2282
|
|
New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 77% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_B2274
|
|
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 92% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2272
|
|
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 94% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2204
|
|
New gene name: sigE. New product name: sigma factor 70 SigE . New product name confidence: Class 1. New homology: 85% idenity to sigE[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_B1902
|
|
New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New homology: 78% idenity to sigJ[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_B1816
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 33% identity and 53% similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B1379
|
|
New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New homology: 75% identity to ecfH[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_B1053
|
|
New gene name: mgtC. New homology: 92% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_B1052
|
|
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 96% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_B1050
|
|
New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 91% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056.
|
Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
|
Sep 15, 2008 |
Bcep18194_B1050
|
|
New gene name: cepI. New product name: autoinducer synthase CepI. New product name confidence: Class 1. New homology: 99% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Sep 15, 2008 |
Bcep18194_B0597
|
|
New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class . New homology: 79% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
|
Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_B0094
|
|
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 89% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_B0004
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
Sep 15, 2008 |
Bcep18194_A6145
|
|
New gene name: sigM. New product name: sigma factor 70 SigM. New homology: 91% identity to SigM[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_A6121
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_A5947
|
|
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcep18194_A5944
|
|
New gene name: coxG. New product name confidence: Class 2. New homology: 79% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcep18194_A5860
|
|
New gene name: fusA. New product name confidence: Class 2. New homology: 94% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_A5807
|
|
New gene name: cysB. New product name: transcription factor CysB. New product name confidence: Class 1. New homology: 99.0% identity to CysB [ B. cepacia IST408]. New evidence reference (PMID): 16997956.
|
Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
Sep 15, 2008 |
Bcep18194_A5765
|
|
New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_A5593
|
|
New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New homology: 97% identity to ecfD[B. cenocepacia J2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep18194_A5121
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New gene name: sigL. New product name: sigma factor 70 SigL. New homology: 84% idenitty to SigL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep18194_A4778
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New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New homology: 90% identity to ecfI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Raymond C. Lo, Simon Fraser University
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Sep 15, 2008 |
Bcep18194_A4743
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New gene name: ssuR. New product name: transcription factor SsuR. New product name confidence: Class 1. New homology: 99% identity to SsuR [B. cenocepacia J2315]. New evidence reference (PMID): 16997956.
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Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
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Sep 15, 2008 |
Bcep18194_A4502
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New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New homology: 95% identity to ecfC[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep18194_A4239
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New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 90% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep18194_A3984
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New gene name: wbiI. New homology: 97% identity to wbiI[accession number AY523838]. New evidence reference (PMID): 15364998.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep18194_A3906
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New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
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Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
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Sep 15, 2008 |
Bcep18194_A3735
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New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 98% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135.
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Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
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Sep 15, 2008 |
Bcep18194_A3420
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New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 97% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
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Sep 15, 2008 |
Bcep18194_A3374
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New homology: 99% identity ot SigK[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep18194_A3204
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New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 83% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep18194_A3197
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New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 87% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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Sep 15, 2008 |
Bcep1808_5262
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Burkholderia vietnamiensis
G4 |
New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New evidence reference (PMID): 17277056.
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Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
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Sep 15, 2008 |
Bcep1808_5260
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Burkholderia vietnamiensis
G4 |
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
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Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
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Sep 15, 2008 |
Bcep1808_5259
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Burkholderia vietnamiensis
G4 |
New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
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Sep 15, 2008 |
Bcep1808_4205
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Burkholderia vietnamiensis
G4 |
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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Sep 15, 2008 |
Bcep1808_4203
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Burkholderia vietnamiensis
G4 |
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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Sep 15, 2008 |
Bcep1808_4001
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Burkholderia vietnamiensis
G4 |
New gene name: bviI. New product name: acyl-homoserine lactone synthase BviI. New product name confidence: Class 1. New evidence reference (PMID): 17277056.
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Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
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Sep 15, 2008 |
Bcep1808_2896
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Burkholderia vietnamiensis
G4 |
New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
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Sep 15, 2008 |
Bcep1808_2731
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Burkholderia vietnamiensis
G4 |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
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Sep 15, 2008 |
Bcep1808_2728
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Burkholderia vietnamiensis
G4 |
New gene name: coxG. New product name confidence: Class 2. New homology: 68% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
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