Burkholderia cenocepacia J2315, BCAL0813 (rpoN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAL0813
NCBI Locus TagQU43_RS40615
Name
rpoN
Replicon chromosome 1
Genomic location 882584 - 884089 (- strand)

Cross-References

RefSeq WP_006483132.1
GI 206559206
Entrez 6931232
GI 206559206
INSDC CAR51119.1
NCBI Locus Tag QU43_RS40615
NCBI Old Locus Tag BCAL0813
RefSeq WP_006483132.1,GeneID
UniParc UPI00017B9194
UniProtKB Acc B4EAS4
UniProtKB ID B4EAS4_BURCJ
UniRef100 UniRef100_B5M998
UniRef50 UniRef50_A1UZM5
UniRef90 UniRef90_A0A095EMC8

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase factor sigma-54
Product Name Confidence: Class 1
Synonyms
Evidence for Translation
Charge (pH 7) -14.86
Kyte-Doolittle Hydrophobicity Value -0.266
Molecular Weight (kDa) 54735.1
Isoelectric Point (pI) 4.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 397 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002642 (655 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL0813
Search term: rpoN

Human Homologs

References

Burkholderia cenocepacia requires the RpoN sigma factor for biofilm formation and intracellular trafficking within macrophages.
Saldías MS, Lamothe J, Wu R, Valvano MA
Infect Immun 2008 Mar;76(3):1059-67
PubMed ID: 18195023
Burkholderia cenocepacia requires the RpoN sigma factor for biofilm formation and intracellular trafficking within macrophages.
Saldías MS, Lamothe J, Wu R, Valvano MA
Infect Immun 2008 Mar;76(3):1059-67
PubMed ID: 18195023