Burkholderia cenocepacia J2315, BCAL0787 (rpoH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAL0787
NCBI Locus TagQU43_RS40490
Name
rpoH
Synonym: sigM
Replicon chromosome 1
Genomic location 859788 - 860723 (- strand)

Cross-References

RefSeq WP_006483735.1
GI 206559184
Entrez 6931215
GI 206559184
INSDC CAR51095.1
NCBI Locus Tag QU43_RS40490
NCBI Old Locus Tag BCAL0787
RefSeq WP_006483735.1,GeneID
UniParc UPI00017B90D9
UniProtKB Acc B4EAQ0
UniProtKB ID B4EAQ0_BURCJ
UniRef100 UniRef100_B4EAQ0
UniRef50 UniRef50_P50511
UniRef90 UniRef90_Q9AMB8

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase factor sigma-32
Product Name Confidence: Class 2
Synonyms sigma factor 70 SigM
Evidence for Translation
Charge (pH 7) -4.07
Kyte-Doolittle Hydrophobicity Value -0.330
Molecular Weight (kDa) 34531.8
Isoelectric Point (pI) 6.12

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002666 (655 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL0787
Search term: rpoH

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability.
Menard A, de Los Santos PE, Graindorge A, Cournoyer B
BMC Genomics 2007 Sep 4;8:308
PubMed ID: 17784948