| Apr 30, 2018 |
BCAL0788
|
Burkholderia cenocepacia
J2315 |
New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAL0787
|
Burkholderia cenocepacia
J2315 |
New gene name: sigM. New product name: sigma factor 70 SigM. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 30, 2018 |
BCAL0535
|
Burkholderia cenocepacia
J2315 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0534
|
Burkholderia cenocepacia
J2315 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0508
|
Burkholderia cenocepacia
J2315 |
New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL0471
|
Burkholderia cenocepacia
J2315 |
New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL0409
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 18776009.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0408
|
Burkholderia cenocepacia
J2315 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 10, 2015 |
BCAL0408
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 18776009.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0404
|
Burkholderia cenocepacia
J2315 |
New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BCAL0352
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0351
|
Burkholderia cenocepacia
J2315 |
New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0350
|
Burkholderia cenocepacia
J2315 |
New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0349
|
Burkholderia cenocepacia
J2315 |
New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0348
|
Burkholderia cenocepacia
J2315 |
New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0347
|
Burkholderia cenocepacia
J2315 |
New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0346
|
Burkholderia cenocepacia
J2315 |
New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0345
|
Burkholderia cenocepacia
J2315 |
New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0344
|
Burkholderia cenocepacia
J2315 |
New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Feb 4, 2013 |
BCAL0343
|
Burkholderia cenocepacia
J2315 |
New product name: BcsL. New gene name: bcsL. New synonym for gene: bcsLB. New synonym for CDS: BcsLB. New GO Accession: GO:0033103(IGC). New PubMed reference: 20729192.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0343
|
Burkholderia cenocepacia
J2315 |
New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Feb 4, 2013 |
BCAL0342
|
Burkholderia cenocepacia
J2315 |
New product name: BcsK. New gene name: bcsK. New product name confidence: Class 1. New synonym for gene: bcsKC. New synonym for CDS: BcsKC. 0 New GO Accession: GO:0033103(IMP). New PubMed reference: 20729192. New subcellular localization: Outer Membrane (Class 1).
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0342
|
Burkholderia cenocepacia
J2315 |
New gene name: tssC. New product name: type VI secretion system protein TssC. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0341
|
Burkholderia cenocepacia
J2315 |
New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0340
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0339
|
Burkholderia cenocepacia
J2315 |
New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0338
|
Burkholderia cenocepacia
J2315 |
New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0337
|
Burkholderia cenocepacia
J2315 |
New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL0323
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAL0274
|
Burkholderia cenocepacia
J2315 |
New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL0216
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 18776009.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL0212
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 18776009.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL0207
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 17933889.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAL0207
|
Burkholderia cenocepacia
J2315 |
New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 63% identity to HppD[A. hydrophila]. New homology: 57% idenity to HppD[P. fluorescens]. New homology: 32% idenity to HppD[S. avermitilis]. New evidence reference (PMID): 17933889.
|
Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
|
| Apr 22, 2009 |
BCAL0144
|
Burkholderia cenocepacia
J2315 |
New gene name: sigK. New product name: sigma factor 70 SigK. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Sep 15, 2008 |
BamMC406_3107
|
Burkholderia ambifaria
MC40-6 |
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
| Aug 25, 2008 |
BamMC406_2576
|
Burkholderia ambifaria
MC40-6 |
New gene name: deh4p. New product name: putative haloacid permease, Deh4p . New product name confidence: Class 2. New homology: 79% identity to putative haloacid permease, Deh4p [B. cepacia MBA4]. New evidence reference (PMID): 17545323.
|
Literature Review. Tsang, Jimmy S. H. The University of Hong Kong
|
| Apr 30, 2018 |
BamMC406_0785
|
Burkholderia ambifaria
MC40-6 |
New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28755
|
Burkholderia ambifaria
AMMD |
New gene name: hmqG. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28750
|
Burkholderia ambifaria
AMMD |
New gene name: hmqF. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28745
|
Burkholderia ambifaria
AMMD |
New gene name: hmqE. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28740
|
Burkholderia ambifaria
AMMD |
New gene name: hmqD. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28735
|
Burkholderia ambifaria
AMMD |
New gene name: hmqC. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28730
|
Burkholderia ambifaria
AMMD |
New gene name: hmqB. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS28725
|
Burkholderia ambifaria
AMMD |
New gene name: hmqA. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27695
|
Burkholderia ambifaria
AMMD |
New gene name: bceK. New product name: BceK. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4210.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27690
|
Burkholderia ambifaria
AMMD |
New gene name: bceJ. New product name: BceJ. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4209.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27685
|
Burkholderia ambifaria
AMMD |
New gene name: bceI. New product name: BceI. New product name confidence: Class 2. New PubMed ID: 14637140. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4208.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27680
|
Burkholderia ambifaria
AMMD |
New gene name: bceH. New product name: BceH. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4207.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27675
|
Burkholderia ambifaria
AMMD |
New gene name: bceG. New product name: BceG. New product name confidence: Class 2. New PubMed ID: 14637140. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4206.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27670
|
Burkholderia ambifaria
AMMD |
New gene name: bceF. New product name: tyrosine kinase BceF. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 23435894. New PubMed ID: 25486990. New PubMed ID: 26590274. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4205.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27665
|
Burkholderia ambifaria
AMMD |
New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27660
|
Burkholderia ambifaria
AMMD |
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27655
|
Burkholderia ambifaria
AMMD |
New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27650
|
Burkholderia ambifaria
AMMD |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27645
|
Burkholderia ambifaria
AMMD |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS26405
|
Burkholderia ambifaria
AMMD |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 2. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment: .Annotation transferred from: BGD:BCAM0580.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS16980
|
Burkholderia ambifaria
AMMD |
New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS16975
|
Burkholderia ambifaria
AMMD |
New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS16965
|
Burkholderia ambifaria
AMMD |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS16960
|
Burkholderia ambifaria
AMMD |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS16950
|
Burkholderia ambifaria
AMMD |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS16945
|
Burkholderia ambifaria
AMMD |
New gene name: bceP. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4474.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS16940
|
Burkholderia ambifaria
AMMD |
New gene name: bceO. New product name: acyltransferase BceO. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4473.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BAMB_RS16935
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Burkholderia ambifaria
AMMD |
New gene name: bceN. New product name: GDP-D-mannose 4,6-dehydratase BceN. New product name confidence: Class 2. New PubMed ID: 23460819. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:BCAM1004.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BAMB_RS16930
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Burkholderia ambifaria
AMMD |
New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BAMB_RS15655
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Burkholderia ambifaria
AMMD |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BAMB_RS15650
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Burkholderia ambifaria
AMMD |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Apr 30, 2018 |
BAMB_RS03910
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Burkholderia ambifaria
AMMD |
New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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| Sep 15, 2008 |
Bamb_6159
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New homology: 50% idenity to sigI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Sep 15, 2008 |
Bamb_6150
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New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 86% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
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Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
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| Sep 15, 2008 |
Bamb_5550
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New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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| Sep 15, 2008 |
Bamb_5548
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New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
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| Sep 15, 2008 |
Bamb_5540
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New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 76% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Aug 25, 2008 |
Bamb_5345
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New gene name: tftC. New product name confidence: Class 2. New alternate product name: TftC. New homology: 42% identity to TftC [B. cepacia AC1100]. New evidence reference (PMID): 12700257.
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Literature Review. Xun, L. Washington State University, Pullman, Washington
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| Sep 15, 2008 |
Bamb_5145
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New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 77% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
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Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
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| Sep 15, 2008 |
Bamb_4967
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New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098.
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Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
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| Sep 15, 2008 |
Bamb_4966
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New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
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Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
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| Aug 25, 2008 |
Bamb_4729
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New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 89% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
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Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
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| Aug 25, 2008 |
Bamb_4728
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New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 93% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
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Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
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| Aug 25, 2008 |
Bamb_4727
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New gene name: prnB. New product name confidence: Class 2. New homology: 85% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
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Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
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| Aug 25, 2008 |
Bamb_4726
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New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 90% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875.
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Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
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| Sep 15, 2008 |
Bamb_4475
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New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 77% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
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Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
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| Sep 15, 2008 |
Bamb_4118
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New gene name: cepI. New product name: autoinducer synthase CepI. New product name confidence: Class 1. New homology: 96% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
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Literature review. Raymond C. Lo, Simon Fraser University
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| Sep 15, 2008 |
Bamb_4118
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New homology: 94% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056.
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Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
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| Sep 15, 2008 |
Bamb_4116
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New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
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Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
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| Sep 15, 2008 |
Bamb_4115
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New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
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| Sep 15, 2008 |
Bamb_3917
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New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New homology: 75% identity to ecfH[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Sep 15, 2008 |
Bamb_3543
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New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New homology: 76% idenity to sigJ[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Sep 15, 2008 |
Bamb_3257
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New gene name: sigE. New product name: sigma factor 70 SigE . New product name confidence: Class 1. New homology: 85% idenity to sigE[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Sep 15, 2008 |
Bamb_2875
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New gene name: sigM. New product name: sigma factor 70 SigM. New homology: 92% identity to SigM[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Sep 15, 2008 |
Bamb_2851
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New gene name: rpoN. New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
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| Aug 25, 2008 |
Bamb_2702
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New gene name: deh4p. New product name: putative haloacid permease, Deh4p . New product name confidence: Class 2. New homology: 79% identity to putative haloacid permease, Deh4p [B. cepacia MBA4]. New evidence reference (PMID): 17545323.
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Literature Review. Tsang, Jimmy S. H. The University of Hong Kong
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| Sep 15, 2008 |
Bamb_2663
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New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
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| Sep 15, 2008 |
Bamb_2660
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New gene name: coxG. New product name confidence: Class 2. New homology: 76% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
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Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
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| Sep 15, 2008 |
Bamb_2576
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New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
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Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
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| Sep 15, 2008 |
Bamb_2525
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New gene name: cysB. New product name: transcription factor CysB. New product name confidence: Class 1. New homology: 99% identity to CysB [ B. cepacia IST408]. New evidence reference (PMID): 16997956.
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Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
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| Sep 15, 2008 |
Bamb_2304
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New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New homology: 97% identity to ecfD[B. cenocepacia J2315]. New evidence reference (PMID): 1774948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Sep 15, 2008 |
Bamb_1758
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New homology: 84% idenitty to SigL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
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Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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| Aug 1, 2008 |
Bamb_1542
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New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 94.6% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
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