| Jan 25, 2011 |
BURPS1106A_0009
|
Burkholderia pseudomallei
1106a |
New pathway: Type II secretion system (T2SS). New pathway: General secretory pathway. New GO accession: GO:0015628 [IGC]. New evidence reference (PMID): 10419967.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1106A_0009
|
Burkholderia pseudomallei
1106a |
New pathway: Type II secretion system (T2SS). New pathway: General secretory pathway. New GO Accession: GO:0015628(IGC). New PubMed reference: 10419967.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1106A_0008
|
Burkholderia pseudomallei
1106a |
New pathway: Type II secretion system (T2SS). New pathway: General secretory pathway. New GO accession: GO:0015628 [IGC]. New evidence reference (PMID): 10419967.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1106A_0008
|
Burkholderia pseudomallei
1106a |
New pathway: Type II secretion system (T2SS). New pathway: General secretory pathway. New GO Accession: GO:0015628(IGC). New PubMed reference: 10419967.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1106A_0007
|
Burkholderia pseudomallei
1106a |
New pathway: Type II secretion system (T2SS). New pathway: General secretory pathway. New GO accession: GO:0015628 [IGC]. New evidence reference (PMID): 10419967.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1106A_0007
|
Burkholderia pseudomallei
1106a |
New pathway: Type II secretion system (T2SS). New pathway: General secretory pathway. New GO Accession: GO:0015628(IGC). New PubMed reference: 10419967.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34840
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwD4. New product name: type IV secretion system-coupling protein ptwD4. New gene name synonym: trwB. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:P09130.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34830
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwC. New gene name synonym: trwC. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:Q8PRK1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34785
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwL. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34780
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwE. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34775
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwK. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34770
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwB. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34760
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwV. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34755
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34705
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwW. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34700
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwU. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34695
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: pwbC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34680
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwN. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34665
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwF. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34645
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwH. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS34640
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: ptwG. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS32320
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: hldA. New product name confidence: Class 1. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: hldD. New product name confidence: Class 1. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rpoE. New product name confidence: Class 1. New PubMed ID: 18227267.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 1. New PubMed ID: 15557647.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: shvR. New product name: ShvR. New product name confidence: Class 1. New PubMed ID: 17967860.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: zmpA. New product name: zinc metalloprotease ZmpA. New product name confidence: Class 1. New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0000279 .New subcellular localization PMID: 12904566 .New PubMed ID: 12904566.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29160
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New gene name synonym: wbxY. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate.Annotation transferred from: UniProtKB:E9NYT3.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29145
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wzx. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3114.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29140
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbxA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3115.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29135
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbxB. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3116.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29130
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: galE. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3117.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29125
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wecA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3118.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29120
|
Burkholderia cenocepacia
K56-2Valvano |
New product name confidence: Class 1. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3119.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29115
|
Burkholderia cenocepacia
K56-2Valvano |
New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3120.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29110
|
Burkholderia cenocepacia
K56-2Valvano |
New product name confidence: Class 1. New PubMed ID: 26116716. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3121.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29105
|
Burkholderia cenocepacia
K56-2Valvano |
New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3122.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29100
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbxC. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3123.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29095
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbxD. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3124.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29090
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: WbxE. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster. New comment: B cenocepacia J2315, but not K56-2, is O-antigen deficient due to a transposon insertion in this gene..Annotation transferred from: BGD:BCAL3125.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS29090
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbxE. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29085
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbxF. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3128.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29080
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: vioA. New product name: nucleotide sugar aminotransferase VioA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3129.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29075
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wzt. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3130.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29070
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wzm. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3131.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29065
|
Burkholderia cenocepacia
K56-2Valvano |
New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BGD:BTH_I1472.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29060
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlC. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BGD:BTH_I1471.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29055
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlA. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD::BTH_I1470.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS29050
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlB. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1469.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28560
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28555
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P0C7L2.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28550
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P77467.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28540
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28290
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28285
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28280
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28275
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28270
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28265
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28260
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28255
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28250
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28245
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28240
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssC. New product name: type VI secretion system protein TssC. New gene name synonym: bcsK. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28235
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28230
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28225
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28220
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28215
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS27075
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: msbA. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 8809774. New comment: .Annotation transferred from: UniProtKB:P60752.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22210
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnT. New product name: 4-amino-4-deoxy-L-arabinose transferase ArnT. New product name confidence: Class 2. New subcellular localization: Cytoplasmic membrane (Class 2). New subcellular localization evidence code (ECO): ECO:0000314. New subcellular localization cross-ref: BGD:BCAL1929. New subcellular localization PMID: 26030265. New PubMed ID: 22742453. New PubMed ID: 26515403. New PubMed ID: 26030265. New PubMed ID: 11535604. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1929.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22200
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnB. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1931.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22195
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnC. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1932.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22190
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnA1. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1933.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22185
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnA2. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1934.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22180
|
Burkholderia cenocepacia
K56-2Valvano |
New product name confidence: Class 2. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1935.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS21450
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: lpxB. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P10441.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS21445
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: lpxA. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A722.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS21435
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: lpxD. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P21645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BURCENK562V_RS20790
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: bptpA. New product name: Burkholderia phosphotyrosine phosphatase, BPtpA. New product name synonym: Low molecular weight protein tyrosine phosphatase, class II.I. New product name confidence: Class 1. New PMID: 31978399.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS20270
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: hemP. New product name confidence: Class 2. New PubMed ID: 28625994. New comment: .Annotation transferred from: BGD:Bmul_1072.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: pvdA. New product name confidence: Class 1. New PubMed ID: 10456885.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rmlD. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbiG. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbiF. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbiI. New product name confidence: Class 2. New PubMed ID: 16513737.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: wbiH. New product name confidence: Class 2. New PubMed ID: 24841205.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rpoN. New product name: alternative sigma factor RpoN. New product name confidence: Class 1. New PubMed ID: 15213146. New PubMed ID: 18195023.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: sodC. New product name: superoxide dismutase SodC. New product name confidence: Class 1. New subcellular localization: Periplasmic (1). New subcellular localization evidence code (ECO): ECO:0000279 .New subcellular localization PMID: 17325048 .New PubMed ID: 17325048.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaF. New product name confidence: Class 1. New PubMed ID: 18776009.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaZ. New product name confidence: Class 1. New PubMed ID: 18776009.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19275
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virD4. New product name: type IV secretion system-coupling protein VirD4. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19270
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virB11. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19265
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virB10. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19260
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virB9. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19255
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virB8. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19250
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virB5. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19245
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virB6. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS19240
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: virB4. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|