Burkholderia cenocepacia K56-2Valvano, BURCENK562V_RS28280 (tagF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Burkholderia cenocepacia K56-2Valvano
GCF_000333155.2|latest |
| Locus Tag |
BURCENK562V_RS28280
|
| NCBI Old Locus Tag | BURCENK562V_C6657 |
| Name |
tagF
Synonym: bcsC |
| Replicon | ctg7180000002941 |
| Genomic location | 456982 - 457971 (- strand) |
| Comment | Part of the T6SS gene cluster |
Cross-References
| RefSeq | WP_006483243.1 |
| GI | 493529227 |
| GI | 493529227 |
| NCBI Locus Tag | BURCENK562V_RS28280 |
| NCBI Old Locus Tag | BURCENK562V_C6657 |
| RefSeq | WP_006483243.1 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
type VI secretion system-associated protein TagF
|
| Synonyms |
type VI secretion protein |
| Evidence for Translation | |
| Charge (pH 7) | -6.11 |
| Kyte-Doolittle Hydrophobicity Value | 0.056 |
| Molecular Weight (kDa) | 36149.1 |
| Isoelectric Point (pI) | 6.08 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Burkholderia Ortholog Group |
BG000377 (643 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: BURCENK562V_RS28280
Search term: tagF
Search term: type VI secretion system-associated protein TagF
|
Human Homologs
References
|
A novel sensor kinase-response regulator hybrid controls biofilm formation and type VI secretion system activity in Burkholderia cenocepacia.
Aubert DF, Flannagan RS, Valvano MA
Infect Immun 2008 May;76(5):1979-91
PubMed ID: 18316384
|
|
Structural biology of type VI secretion systems.
Cascales E, Cambillau C
Philos Trans R Soc Lond B Biol Sci 2012 Apr 19;367(1592):1102-11
PubMed ID: 22411981
|
|
Quantification of type VI secretion system activity in macrophages infected with Burkholderia cenocepacia.
Aubert DF, Hu S, Valvano MA
Microbiology 2015 Nov;161(11):2161-73
PubMed ID: 26364149
|