Apr 10, 2015 |
BMAA0728
|
|
New gene name: tssN. New product name confidence: Class 1. New PubMed ID: 23800426. New genomic context: T6SS-1 gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2093
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malF. New product name: polyketide synthase MalF. New product name confidence: Class 1. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
AK34_RS06440
|
Burkholderia dolosa
AU0158 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1897
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssF-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMASAVP1_0599
|
Burkholderia mallei
SAVP1 |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA1520
|
|
New product name: Chaperone protein BicP. New gene name synonym: sicP. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 21801239. Annotation transferred from: UniProtKB:P0CL16.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2749
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA1517
|
|
New PubMed ID: 17555434.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2094
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malG. New product name: MalG. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BPSS1683
|
Burkholderia pseudomallei
K96243 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1896
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssG-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0219
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMIDs: 22919579, 20019083.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10247_A1666
|
Burkholderia mallei
NCTC 10247 |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BTH_II0840
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2758
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BTH_II0863
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name confidence: Class 1. New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001230 .New subcellular localization PMID: 24452686 .New PubMed ID: 24452686.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2095
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malI. New product name: MalI. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster. New comment: Incorrect translation start site called at 2571743 during initial annotation. The site was changed to 2573204 based on alignment with B. pseudomallei K96243 BPSS0303.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0697
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1895
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssH-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
WQ49_RS20325
|
Burkholderia cenocepacia
K56-2 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMIDs: 22919579, 20019083.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10229_0710
|
Burkholderia mallei
NCTC 10229 |
New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS1533
|
Burkholderia pseudomallei
K96243 |
New product name confidence: Class 1. New PubMed ID: 20951592. New PubMed ID: 11296219.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2764
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS1502
|
Burkholderia pseudomallei
K96243 |
New product name: TssH-5. New product name confidence: Class 1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2096
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malJ. New product name: MalJ. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
bglu_2g08560
|
Burkholderia glumae
BGR1 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1894
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssI-4a. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0223
|
Burkholderia cenocepacia
J2315 |
New product name: vitronectin-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: A BCAM0223::Tp mutant was deficient in hemagglutination, affected in adherence to vitronectin and in biofilm formation and showed attenuated virulence in the Galleria mellonella model of infection. . New PMIDs: 22919579, 22848588, 20019083.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0749
|
|
New gene name: bimA. New product name: Burkholderia intracellular motility A, BimA. New product name confidence: Class 2. New PubMed ID: 15773977. Annotation transferred from: Locus Tag:BPSS1492.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS668_A2163
|
Burkholderia pseudomallei
668 |
New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2797
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2097
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malK. New product name: MalK. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
Bmul_4607
|
Burkholderia multivorans
ATCC 17616 |
New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1893
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssI-4b. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
WQ49_RS20305
|
Burkholderia cenocepacia
K56-2 |
New product name: vitronectin-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: A BCAM0223::Tp mutant was deficient in hemagglutination, affected in adherence to vitronectin and in biofilm formation and showed attenuated virulence in the Galleria mellonella model of infection. . New PMIDs: 22919579, 22848588, 20019083.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS0796
|
Burkholderia pseudomallei
K96243 |
New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 1. New PubMed ID: 20920184.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1710b_A057
|
Burkholderia pseudomallei
1710b |
New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2818
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA1865
|
|
New PubMed ID: 23800426.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2098
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malL. New product name: MalL. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BAMB_RS16965
|
Burkholderia ambifaria
AMMD |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1892
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagAB-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0224
|
Burkholderia cenocepacia
J2315 |
New product name: collagen type 1-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: BCAM0224 is a trimeric autotransporter adhesin required for cell adhesion and virulence (PMID:20019083). New PMIDs: 22919579, 20019083.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS668_A1168
|
Burkholderia pseudomallei
668 |
New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1106A_A207
|
Burkholderia pseudomallei
1106a |
New gene name: bicA. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2827
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0553
|
|
New PubMed ID: 23800426.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II2099
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: malM. New product name: MalM. New PubMed ID: 29087175. New PubMed ID: 22765305. New comment: Belongs to the malleilactone biosynthetic gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
I35_RS21120
|
Burkholderia cenocepacia
H111 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1891
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagB-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM2418
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: Comparative DNA sequence analysis of BCAM2418 genes (structural and promoter regions) of various B. cenocepacia isolates revealed that their lengths greatly vary according to the number of repetitive elements (PMID:32097539). New PMIDs: 22919579, 32097539.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1710b_A238
|
Burkholderia pseudomallei
1710b |
New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10247_A0752
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2839
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS668_0018
|
Burkholderia pseudomallei
668 |
New gene name: gspM. New product name confidence: Class 1. New PubMed ID: 24866793.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_I2393
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: fenI. New product name confidence: Class 2. New PubMed ID: 29087175. New comment: .Annotation transferred from: UniProtKB:Q9L7W7.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BURCENK562V_RS08375
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1890
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagC-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BURCENK562V_RS15440
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New PMIDs: 22919579, 32097539.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1106A_A109
|
Burkholderia pseudomallei
1106a |
New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMA10229_2072
|
Burkholderia mallei
NCTC 10229 |
New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 11296219. Annotation transferred from: Locus Tag:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2859
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS668_0019
|
Burkholderia pseudomallei
668 |
New gene name: gspN. New PubMed ID: 24866793.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0188
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 28614901. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCEP18194_RS33295
|
Burkholderia lata
383 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1889
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagD-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 20, 2020 |
WQ49_RS07805
|
Burkholderia cenocepacia
K56-2 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New PMIDs: 22919579, 32097539.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BMA10247_A1776
|
Burkholderia mallei
NCTC 10247 |
New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BPSL0001
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BPSL2865
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BPSS1512
|
Burkholderia pseudomallei
K96243 |
New gene name: tssM. New product name confidence: Class 1. New PubMed ID: 24866793.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
Bmul_1072
|
Burkholderia multivorans
ATCC 17616 |
New gene name: hemP. New product name: Hemin uptake protein HemP. New product name confidence: Class 1. New PubMed ID: 28625994. New comment:
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
BCAM1010
|
Burkholderia cenocepacia
J2315 |
New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
BTH_II1888
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssJ-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 20, 2020 |
BCAM1115
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BMA10229_0813
|
Burkholderia mallei
NCTC 10229 |
New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSS0796.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BPSL0067
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BPSL2871
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
Bcep1808_4200
|
Burkholderia vietnamiensis
G4 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
BCAL2297
|
Burkholderia cenocepacia
J2315 |
New gene name: hemP. New product name: Hemin uptake protein HemP. New product name confidence: Class 2. New PubMed ID: 28625994. New comment: .Annotation transferred from: BGD:Bmul_1072.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
AK34_RS06435
|
Burkholderia dolosa
AU0158 |
New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
BTH_II1887
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssK-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 20, 2020 |
BURCENK562V_RS08875
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BMAA0649
|
|
New gene name: boaA. New product name: Burkholderia oligomeric coiled-coil adhesin A, BoaA. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BMAA0649.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BPSL0074
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2872
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4201
|
Burkholderia vietnamiensis
G4 |
New gene name: bceB. New product name: BceB. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
BURCENK562V_RS20270
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: hemP. New product name confidence: Class 2. New PubMed ID: 28625994. New comment: .Annotation transferred from: BGD:Bmul_1072.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BPSS1682
|
Burkholderia pseudomallei
K96243 |
New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1886
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssL-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
WQ49_RS15905
|
Burkholderia cenocepacia
K56-2 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL1705
|
Burkholderia pseudomallei
K96243 |
New gene name: boaB. New product name: BoaB. New product name confidence: Class 1. New PubMed ID: 2092018. New PubMed ID: 25830295.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BPSL0075a
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL2874
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4202
|
Burkholderia vietnamiensis
G4 |
New gene name: bceC. New product name: BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 30, 2018 |
Bmul_3338
|
Burkholderia multivorans
ATCC 17616 |
New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 1. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II0699
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BTH_II1885
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssM-4. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-4 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAS0236
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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Apr 10, 2015 |
BURPS1710b_2168
|
Burkholderia pseudomallei
1710b |
New gene name: boaB. New product name: BoaB. New product name confidence: Class 2. New PubMed ID: 20920184. Annotation transferred from: Locus Tag:BPSL1705.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|