Burkholderia cenocepacia J2315, BCAS0712

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 1 65 2.4E-20
ProSiteProfiles PS50956 AsnC-type HTH domain profile. IPR000485 AsnC-type HTH domain 12 73 30.254
Coils Coil 79 99 -
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 28 39 2.4E-14
Gene3D G3DSA:3.30.70.920 66 149 2.0E-29
SUPERFAMILY SSF54909 IPR011008 Dimeric alpha-beta barrel 72 161 9.12E-24
Coils Coil 20 40 -
Pfam PF01037 Lrp/AsnC ligand binding domain IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain 78 152 4.0E-27
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 12 28 2.4E-14
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 11 71 2.35E-15
Pfam PF13404 AsnC-type helix-turn-helix domain IPR000485 AsnC-type HTH domain 12 53 1.7E-15
ProSitePatterns PS00519 AsnC-type HTH domain signature. IPR019885 Transcription regulator HTH, AsnC-type, conserved site 30 56 -
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 39 58 2.4E-14
SMART SM00344 IPR019888 Transcription regulator AsnC-type 12 121 3.1E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.