Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0043565 | sequence-specific DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0008134 | transcription factor binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
SUPERFAMILY | SSF52540 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | 21 | 257 | 5.9E-70 | |
Gene3D | G3DSA:3.40.50.300 | 5 | 186 | 1.0E-65 | |||
Pfam | PF00158 | Sigma-54 interaction domain | IPR002078 | RNA polymerase sigma factor 54 interaction domain | 22 | 182 | 8.5E-69 |
ProSitePatterns | PS00675 | Sigma-54 interaction domain ATP-binding region A signature. | IPR025662 | Sigma-54 interaction domain, ATP-binding site 1 | 40 | 53 | - |
SMART | SM00382 | IPR003593 | AAA+ ATPase domain | 36 | 179 | 4.2E-9 | |
ProSitePatterns | PS00676 | Sigma-54 interaction domain ATP-binding region B signature. | IPR025943 | Sigma-54 interaction domain, ATP-binding site 2 | 102 | 117 | - |
Pfam | PF02954 | Bacterial regulatory protein, Fis family | IPR002197 | DNA binding HTH domain, Fis-type | 301 | 335 | 7.3E-5 |
ProSitePatterns | PS00688 | Sigma-54 interaction domain C-terminal part signature. | IPR025944 | Sigma-54 interaction domain, conserved site | 229 | 238 | - |
Gene3D | G3DSA:1.10.10.60 | 264 | 339 | 3.5E-8 | |||
Gene3D | G3DSA:1.10.8.60 | 187 | 263 | 1.7E-21 | |||
ProSiteProfiles | PS50045 | Sigma-54 interaction domain profile. | IPR002078 | RNA polymerase sigma factor 54 interaction domain | 16 | 245 | 63.869 |
SUPERFAMILY | SSF46689 | IPR009057 | Homeobox-like domain superfamily | 229 | 337 | 9.41E-9 | |
CDD | cd00009 | AAA | 26 | 180 | 9.51918E-24 |