Burkholderia cenocepacia J2315, BCAM2833

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016117 carotenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03465
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004310 farnesyl-diphosphate farnesyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00683
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03465
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006696 ergosterol biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00683
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051996 squalene synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00683
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj00906 Carotenoid biosynthesis 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj01100 Metabolic pathways 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj01110 Biosynthesis of secondary metabolites 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF48576 IPR008949 Isoprenoid synthase domain superfamily 20 281 1.87E-62
TIGRFAM TIGR03465 HpnD: squalene synthase HpnD IPR017828 Squalene synthase HpnD-like 17 281 7.3E-101
Pfam PF00494 Squalene/phytoene synthase 20 266 8.4E-59
ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. IPR019845 Squalene/phytoene synthase, conserved site 158 183 -
Gene3D G3DSA:1.10.600.10 IPR008949 Isoprenoid synthase domain superfamily 7 260 1.2E-63
CDD cd00683 Trans_IPPS_HH IPR033904 Trans-Isoprenyl Diphosphate Synthases, head-to-head 20 272 1.15071E-72

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.