Burkholderia cenocepacia J2315, BCAM2748 (ecfK)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR02957 SigX4: RNA polymerase sigma-70 factor, TIGR02957 family IPR014303 RNA polymerase sigma-70, ECF type 9 290 1.9E-117
Gene3D G3DSA:1.10.1740.10 4 78 1.1E-9
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 11 73 5.6E-16
SUPERFAMILY SSF54427 IPR032710 NTF2-like domain superfamily 173 291 6.65E-15
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 9 163 3.1E-18
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 89 165 7.5E-11
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 108 163 5.98E-11
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 9 89 1.37E-15
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 110 161 3.2E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.