Burkholderia cenocepacia J2315, BCAM2371 (sigI)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 1 20 -
Gene3D G3DSA:1.10.220.120 IPR042189 Sigma-70 factor, region 1.1 superfamily 24 84 3.0E-14
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 588 603 2.1E-22
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 545 628 1.9E-20
Pfam PF03979 Sigma-70 factor, region 1.1 IPR007127 RNA polymerase sigma factor 70, region 1.1 28 83 4.8E-11
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 468 543 1.0E-10
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 468 539 1.05E-6
ProSitePatterns PS00716 Sigma-70 factors family signature 2. IPR000943 RNA polymerase sigma-70 588 614 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 567 579 2.1E-22
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 391 616 7.8E-36
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 526 619 7.85E-23
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 564 616 1.1E-13
Pfam PF04546 Sigma-70, non-essential region IPR007631 RNA polymerase sigma factor 70, non-essential domain 164 362 5.7E-8
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 122 153 8.3E-10
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 603 614 2.1E-22
CDD cd06171 Sigma70_r4 557 615 1.82644E-10
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 139 461 3.79E-65
ProSitePatterns PS00715 Sigma-70 factors family signature 1. IPR000943 RNA polymerase sigma-70 419 432 -
Pfam PF04539 Sigma-70 region 3 IPR007624 RNA polymerase sigma-70 region 3 476 550 1.7E-12
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 443 451 2.1E-22
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 395 464 3.1E-21
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 419 432 2.1E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.