Burkholderia cenocepacia J2315, BCAM1504

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 102 286 9.9E-59
SMART SM00382 IPR003593 AAA+ ATPase domain 136 279 3.0E-7
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 117 282 2.0E-62
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 116 344 60.288
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 117 349 2.46E-63
ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. IPR025662 Sigma-54 interaction domain, ATP-binding site 1 140 153 -
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 384 415 2.8E-9
ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. IPR025944 Sigma-54 interaction domain, conserved site 328 337 -
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 328 416 1.39E-9
CDD cd00009 AAA 118 277 1.17873E-17
Gene3D G3DSA:1.10.10.60 376 416 2.4E-10
Gene3D G3DSA:1.10.8.60 287 351 6.1E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.