Burkholderia cenocepacia J2315, BCAM1111 (speF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF009393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016831 carboxy-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF009393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006520 cellular amino acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF009393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.640.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG (InterPro) 00480 Glutathione metabolism InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG bcj01110 Biosynthesis of secondary metabolites 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj01100 Metabolic pathways 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc putrescine biosynthesis IV InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG bcj01130 Biosynthesis of antibiotics 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc putrescine biosynthesis III InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG bcj00330 Arginine and proline metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG (InterPro) 00330 Arginine and proline metabolism InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG bcj00480 Glutathione metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.90.100.10 600 725 3.1E-44
Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain IPR000310 Orn/Lys/Arg decarboxylase, major domain 108 547 2.4E-176
ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. IPR000310 Orn/Lys/Arg decarboxylase, major domain 349 363 -
CDD cd00615 Orn_deC_like IPR000310 Orn/Lys/Arg decarboxylase, major domain 109 436 7.52659E-116
Gene3D G3DSA:3.90.1150.10 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 420 599 7.9E-69
Gene3D G3DSA:3.40.640.10 IPR015421 Pyridoxal phosphate-dependent transferase, major domain 108 419 8.8E-85
SUPERFAMILY SSF53383 IPR015424 Pyridoxal phosphate-dependent transferase 108 567 6.63E-119
PIRSF PIRSF009393 IPR011193 Ornithine/lysine/arginine decarboxylase 5 719 1.8E-274
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 1 107 4.57E-28
Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IPR008286 Orn/Lys/Arg decarboxylase, C-terminal 575 704 1.7E-49
Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IPR005308 Orn/Lys/Arg decarboxylase, N-terminal 4 102 1.0E-15
Gene3D G3DSA:3.40.50.220 IPR027464 Ornithine decarboxylase, N-terminal 1 107 5.1E-17
SUPERFAMILY SSF55904 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily 571 718 2.88E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.