Burkholderia cenocepacia J2315, BCAL3486 (ecfM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 24 164 3.3E-13
SUPERFAMILY SSF54427 IPR032710 NTF2-like domain superfamily 175 292 3.87E-16
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 23 84 1.3E-13
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 112 161 4.2E-10
Gene3D G3DSA:1.10.1740.10 7 88 1.8E-8
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 111 166 6.6E-8
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 17 104 2.31E-12
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 107 164 2.8E-9
Gene3D G3DSA:3.10.450.50 169 292 2.4E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.