Burkholderia cenocepacia J2315, BCAL2462 (ecfE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 9 92 1.14E-16
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 119 159 1.3E-9
Gene3D G3DSA:1.10.1740.10 2 80 2.0E-13
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 87 177 2.5E-12
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 13 77 1.2E-11
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 19 174 3.1E-22
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 89 177 5.42E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.