Burkholderia cenocepacia J2315, BCAL2149

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03410 Base excision repair 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00478 IPR003265 HhH-GPD domain 117 269 9.4E-13
Gene3D G3DSA:1.10.1670.40 82 266 2.2E-59
SUPERFAMILY SSF48150 IPR011257 DNA glycosylase 97 267 3.49E-39
Gene3D G3DSA:1.10.340.30 107 216 2.2E-59
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 109 266 3.36886E-27
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 114 253 1.7E-10
MobiDBLite mobidb-lite consensus disorder prediction 1 32 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.