Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0008134 | transcription factor binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0043565 | sequence-specific DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
SUPERFAMILY | SSF52540 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | 339 | 576 | 5.89E-60 | |
Gene3D | G3DSA:1.10.10.60 | 591 | 633 | 1.5E-10 | |||
SUPERFAMILY | SSF55781 | 69 | 207 | 1.37E-7 | |||
PRINTS | PR01590 | FIS bacterial regulatory protein HTH signature | IPR002197 | DNA binding HTH domain, Fis-type | 614 | 634 | 7.8E-5 |
ProSitePatterns | PS00675 | Sigma-54 interaction domain ATP-binding region A signature. | IPR025662 | Sigma-54 interaction domain, ATP-binding site 1 | 359 | 372 | - |
Pfam | PF01590 | GAF domain | IPR003018 | GAF domain | 88 | 201 | 5.4E-7 |
Gene3D | G3DSA:1.10.8.60 | 508 | 583 | 2.5E-12 | |||
ProSiteProfiles | PS50045 | Sigma-54 interaction domain profile. | IPR002078 | RNA polymerase sigma factor 54 interaction domain | 335 | 563 | 54.301 |
CDD | cd00009 | AAA | 341 | 498 | 1.18786E-22 | ||
ProSitePatterns | PS00676 | Sigma-54 interaction domain ATP-binding region B signature. | IPR025943 | Sigma-54 interaction domain, ATP-binding site 2 | 422 | 437 | - |
Pfam | PF02954 | Bacterial regulatory protein, Fis family | IPR002197 | DNA binding HTH domain, Fis-type | 592 | 631 | 1.3E-10 |
ProSitePatterns | PS00688 | Sigma-54 interaction domain C-terminal part signature. | IPR025944 | Sigma-54 interaction domain, conserved site | 547 | 556 | - |
Gene3D | G3DSA:3.40.50.300 | 334 | 507 | 3.1E-56 | |||
PRINTS | PR01590 | FIS bacterial regulatory protein HTH signature | IPR002197 | DNA binding HTH domain, Fis-type | 597 | 614 | 7.8E-5 |
SUPERFAMILY | SSF46689 | IPR009057 | Homeobox-like domain superfamily | 547 | 633 | 4.35E-9 | |
Pfam | PF00158 | Sigma-54 interaction domain | IPR002078 | RNA polymerase sigma factor 54 interaction domain | 338 | 500 | 8.9E-62 |
Gene3D | G3DSA:3.30.450.40 | IPR029016 | GAF-like domain superfamily | 25 | 206 | 2.6E-36 | |
SMART | SM00382 | IPR003593 | AAA+ ATPase domain | 355 | 499 | 9.4E-12 |