Burkholderia cenocepacia J2315, BCAL1817

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. IPR025943 Sigma-54 interaction domain, ATP-binding site 2 234 249 -
SMART SM00091 IPR000014 PAS domain 22 88 1.5E-4
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 148 383 60.391
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 367 455 1.15E-7
ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. IPR025662 Sigma-54 interaction domain, ATP-binding site 1 172 185 -
Gene3D G3DSA:3.30.450.20 21 136 5.8E-11
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 148 397 3.52E-67
SMART SM00382 IPR003593 AAA+ ATPase domain 168 311 6.6E-12
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 426 452 1.4E-5
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 149 314 9.6E-64
CDD cd00009 AAA 149 310 4.71116E-23
CDD cd00130 PAS IPR000014 PAS domain 32 130 1.83878E-6
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 25 130 2.44E-13
Pfam PF08448 PAS fold IPR013656 PAS fold-4 28 137 2.0E-20
Gene3D G3DSA:1.10.8.60 319 404 4.8E-21
Gene3D G3DSA:3.40.50.300 137 318 3.1E-62
ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. IPR025944 Sigma-54 interaction domain, conserved site 367 376 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.