Burkholderia cenocepacia J2315, BCAL1662

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02203
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06225
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06225
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj02020 Two-component system 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj02030 Bacterial chemotaxis 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00672 HAMP domain IPR003660 HAMP domain 210 260 1.1E-7
MobiDBLite mobidb-lite consensus disorder prediction 537 589 -
SUPERFAMILY SSF58104 232 513 4.58E-73
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 480 2.3E-53
Coils Coil 288 308 -
Coils Coil 469 507 -
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 392 421 7.1E-59
SMART SM00304 IPR003660 HAMP domain 212 264 4.6E-9
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 440 469 7.1E-59
ProSiteProfiles PS50885 HAMP domain profile. IPR003660 HAMP domain 212 264 9.738
CDD cd06225 HAMP IPR003660 HAMP domain 214 261 1.98757E-5
Pfam PF02203 Tar ligand binding domain homologue IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding 4 173 2.8E-46
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 265 512 5.4E-87
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 363 390 7.1E-59
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 269 498 52.696
CDD cd11386 MCP_signal 292 483 1.21301E-45
Gene3D G3DSA:1.10.287.950 212 514 6.4E-90
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 286 315 7.1E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.