Burkholderia cenocepacia J2315, BCAL1509 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01509
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase IPR014780 tRNA pseudouridine synthase II, TruB 17 224 4.0E-81
SUPERFAMILY SSF55120 IPR020103 Pseudouridine synthase, catalytic domain superfamily 15 245 1.44E-82
SUPERFAMILY SSF88697 IPR015947 PUA-like superfamily 246 307 5.96E-7
Hamap MF_01080 tRNA pseudouridine synthase B [truB]. IPR014780 tRNA pseudouridine synthase II, TruB 16 306 19.513
Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) IPR002501 Pseudouridine synthase II, N-terminal 38 185 2.5E-58
CDD cd02573 PseudoU_synth_EcTruB IPR014780 tRNA pseudouridine synthase II, TruB 18 227 5.5366E-123
Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain IPR032819 tRNA pseudouridylate synthase B, C-terminal 186 243 4.3E-18
Pfam PF09157 Pseudouridine synthase II TruB, C-terminal IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal 247 306 4.3E-16
Gene3D G3DSA:3.30.2350.10 7 250 1.4E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.