Burkholderia cenocepacia J2315, BCAL1506 (nusA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13184
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08529
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006353 DNA-templated transcription, termination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00945_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47794
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0031554 regulation of DNA-templated transcription, termination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08529
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0031564 transcription antitermination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00945_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd02134 NusA_KH 204 276 0.00132712
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 139 198 1.2E-8
TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication IPR010214 Transcription termination factor NusA, C-terminal duplication 367 416 8.1E-20
SUPERFAMILY SSF47794 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical 359 418 1.02E-15
CDD cd02134 NusA_KH 282 341 2.10074E-14
SUPERFAMILY SSF47794 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical 433 490 1.88E-12
Gene3D G3DSA:3.30.1480.10 IPR036555 NusA, N-terminal domain superfamily 1 132 4.1E-43
SUPERFAMILY SSF54814 IPR009019 K homology domain superfamily, prokaryotic type 202 280 5.69E-29
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 136 201 7.17E-17
SUPERFAMILY SSF54814 IPR009019 K homology domain superfamily, prokaryotic type 281 344 2.03E-14
SUPERFAMILY SSF69705 IPR036555 NusA, N-terminal domain superfamily 1 129 5.89E-40
TIGRFAM TIGR01953 NusA: transcription termination factor NusA IPR010213 Transcription termination factor NusA 5 344 2.9E-122
SMART SM00316 IPR022967 RNA-binding domain, S1 136 202 1.4E-9
Pfam PF14520 Helix-hairpin-helix domain 432 487 5.5E-9
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 138 202 11.899
TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication IPR010214 Transcription termination factor NusA, C-terminal duplication 443 489 1.1E-15
Gene3D G3DSA:2.40.50.140 137 200 2.2E-20
CDD cd04455 S1_NusA 135 201 1.6855E-23
Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. IPR030842 Transcription termination/antitermination protein NusA, bacterial 2 412 29.158
Gene3D G3DSA:1.10.150.20 357 423 1.5E-28
ProSiteProfiles PS50084 Type-1 KH domain profile. 304 340 9.561
Gene3D G3DSA:3.30.300.20 IPR015946 K homology domain-like, alpha/beta 201 279 2.9E-29
Gene3D G3DSA:3.30.300.20 IPR015946 K homology domain-like, alpha/beta 280 347 6.3E-25
Coils Coil 405 425 -
SMART SM00322 IPR004087 K Homology domain 303 376 0.0093
Gene3D G3DSA:1.10.150.20 431 489 1.0E-19
SMART SM00322 IPR004087 K Homology domain 232 295 36.0
Pfam PF13184 NusA-like KH domain IPR025249 KH domain, NusA-like 232 299 4.1E-24
Pfam PF08529 NusA N-terminal domain IPR013735 Transcription factor NusA, N-terminal 4 127 1.3E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.