Burkholderia cenocepacia J2315, BCAL1504

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016866 intramolecular transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 1 129 -
CDD cd02556 PseudoU_synth_RluB 245 410 1.18104E-83
MobiDBLite mobidb-lite consensus disorder prediction 501 583 -
TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase IPR000748 Pseudouridine synthase, RsuA/RluB/E/F 250 410 5.8E-50
CDD cd00165 S4 IPR002942 RNA-binding S4 domain 185 250 1.88029E-11
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 185 227 9.6E-9
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA 246 379 2.0E-13
ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site 284 298 -
MobiDBLite mobidb-lite consensus disorder prediction 151 174 -
MobiDBLite mobidb-lite consensus disorder prediction 419 450 -
SUPERFAMILY SSF55120 IPR020103 Pseudouridine synthase, catalytic domain superfamily 244 415 3.84E-40
ProSiteProfiles PS50889 S4 RNA-binding domain profile. IPR002942 RNA-binding S4 domain 183 252 12.361
Gene3D G3DSA:3.30.70.580 248 406 1.6E-45
SUPERFAMILY SSF55174 185 276 1.57E-16
Gene3D G3DSA:3.10.290.10 IPR036986 RNA-binding S4 domain superfamily 178 238 1.3E-20
SMART SM00363 IPR002942 RNA-binding S4 domain 183 243 5.9E-9
MobiDBLite mobidb-lite consensus disorder prediction 89 103 -
Gene3D G3DSA:3.30.70.1560 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain 308 398 1.6E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.