Burkholderia cenocepacia J2315, BCAL1471

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS00622 LuxR-type HTH domain signature. IPR000792 Transcription regulator LuxR, C-terminal 138 165 -
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 6 116 2.3E-7
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 124 175 4.73934E-14
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 123 176 5.1E-16
SMART SM00421 IPR000792 Transcription regulator LuxR, C-terminal 121 178 1.0E-16
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 119 180 2.9E-17
Pfam PF13426 PAS domain IPR000014 PAS domain 20 115 1.1E-8
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 154 166 4.7E-10
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 6 113 7.5E-13
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 138 154 4.7E-10
ProSiteProfiles PS50043 LuxR-type HTH domain profile. IPR000792 Transcription regulator LuxR, C-terminal 117 181 20.795
SMART SM00091 IPR000014 PAS domain 4 70 0.0012
Gene3D G3DSA:3.30.450.20 2 118 5.5E-25
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 124 138 4.7E-10
CDD cd00130 PAS IPR000014 PAS domain 17 100 8.31949E-8
SUPERFAMILY SSF46894 IPR016032 Signal transduction response regulator, C-terminal effector 110 178 3.74E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.