Burkholderia cenocepacia J2315, BCAL1005 (rnc2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016075 rRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004525 ribonuclease III activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF14622
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00535 IPR000999 Ribonuclease III domain 18 146 3.2E-50
SUPERFAMILY SSF54768 106 220 2.04E-25
ProSitePatterns PS00517 Ribonuclease III family signature. IPR000999 Ribonuclease III domain 35 43 -
Gene3D G3DSA:3.30.160.20 151 221 1.4E-17
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile. IPR014720 Double-stranded RNA-binding domain 152 222 18.471
ProSiteProfiles PS50142 Ribonuclease III family domain profile. IPR000999 Ribonuclease III domain 3 125 43.889
SMART SM00358 IPR014720 Double-stranded RNA-binding domain 153 221 1.1E-16
CDD cd00593 RIBOc IPR000999 Ribonuclease III domain 18 146 2.50411E-56
Gene3D G3DSA:1.10.1520.10 IPR036389 Ribonuclease III, endonuclease domain superfamily 2 145 4.2E-44
SUPERFAMILY SSF69065 IPR036389 Ribonuclease III, endonuclease domain superfamily 3 155 1.59E-47
Hamap MF_00104 Ribonuclease 3 [rnc]. IPR011907 Ribonuclease III 6 217 29.264
Pfam PF00035 Double-stranded RNA binding motif IPR014720 Double-stranded RNA-binding domain 153 218 1.6E-11
CDD cd00048 DSRM IPR014720 Double-stranded RNA-binding domain 152 191 5.5324E-9
TIGRFAM TIGR02191 RNaseIII: ribonuclease III IPR011907 Ribonuclease III 6 219 3.6E-71
MobiDBLite mobidb-lite consensus disorder prediction 308 345 -
Pfam PF14622 Ribonuclease-III-like IPR000999 Ribonuclease III domain 16 138 4.6E-36
MobiDBLite mobidb-lite consensus disorder prediction 308 409 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.