Burkholderia cenocepacia J2315, BCAL0969

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 253 300 4.41E-11
Gene3D G3DSA:2.60.120.10 IPR014710 RmlC-like jelly roll fold 25 97 4.2E-5
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 20 147 1.8E-22
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 254 295 -
SUPERFAMILY SSF51215 IPR037923 Transcription regulator HTH-like 29 140 2.48E-23
Gene3D G3DSA:1.10.10.60 198 254 1.2E-15
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 283 299 1.5E-5
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 217 299 4.8E-28
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 268 283 1.5E-5
Gene3D G3DSA:1.10.10.60 255 301 3.9E-12
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 200 251 4.79E-10
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 204 301 25.104
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 223 300 7.1E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.