Burkholderia cenocepacia J2315, BCAL0787 (rpoH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.601.10 35 148 2.1E-30
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 76 145 5.0E-18
Gene3D G3DSA:1.20.140.160 150 310 4.4E-15
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 39 66 5.6E-7
Coils Coil 177 197 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 277 292 2.5E-16
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 124 132 2.5E-16
Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. IPR012759 RNA polymerase sigma factor RpoH, proteobacteria 18 309 52.845
TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH IPR012759 RNA polymerase sigma factor RpoH, proteobacteria 37 308 2.0E-123
ProSitePatterns PS00715 Sigma-70 factors family signature 1. IPR000943 RNA polymerase sigma-70 100 113 -
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 71 307 9.9E-31
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 211 309 4.86E-15
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 292 303 2.5E-16
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 249 304 2.7E-13
ProSitePatterns PS00716 Sigma-70 factors family signature 2. IPR000943 RNA polymerase sigma-70 277 303 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 100 113 2.5E-16
CDD cd06171 Sigma70_r4 246 304 1.91273E-8
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 38 145 2.75E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.