Burkholderia cenocepacia J2315, BCAL0422 (dnaN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009360 DNA polymerase III complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02767
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02767
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03030 DNA replication 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj01100 Metabolic pathways 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj03440 Homologous recombination 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj00240 Pyrimidine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj03430 Mismatch repair 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj00230 Purine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55979 5 119 3.62E-21
Gene3D G3DSA:3.10.150.10 5 244 1.1E-111
Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain IPR022634 DNA polymerase III, beta sliding clamp, N-terminal 6 119 5.3E-27
PIRSF PIRSF000804 IPR001001 DNA polymerase III, beta sliding clamp 1 368 4.6E-113
Pfam PF02767 DNA polymerase III beta subunit, central domain IPR022637 DNA polymerase III, beta sliding clamp, central 130 245 3.0E-34
SMART SM00480 IPR001001 DNA polymerase III, beta sliding clamp 18 364 1.9E-107
Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain IPR022635 DNA polymerase III, beta sliding clamp, C-terminal 248 367 2.6E-32
CDD cd00140 beta_clamp IPR001001 DNA polymerase III, beta sliding clamp 4 367 6.95699E-152
Gene3D G3DSA:3.70.10.10 139 366 1.1E-111
SUPERFAMILY SSF55979 128 246 2.66E-28
SUPERFAMILY SSF55979 247 368 1.49E-35
TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit IPR001001 DNA polymerase III, beta sliding clamp 6 367 7.6E-96

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.