Burkholderia cenocepacia MC0-3, Bcenmc03_5824 (ecfH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 197 257 1.7E-17
Gene3D G3DSA:1.10.1740.10 78 196 4.1E-26
CDD cd06171 Sigma70_r4 198 251 1.61421E-11
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 81 185 1.52E-26
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 99 254 1.1E-30
MobiDBLite mobidb-lite consensus disorder prediction 41 82 -
MobiDBLite mobidb-lite consensus disorder prediction 1 31 -
MobiDBLite mobidb-lite consensus disorder prediction 1 82 -
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 170 256 7.66E-16
ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. IPR000838 RNA polymerase sigma factor 70, ECF, conserved site 125 157 -
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 103 170 8.5E-20
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 199 250 6.8E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.