Burkholderia cenocepacia MC0-3, Bcenmc03_3387 (sigJ)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF03979	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF03979	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	104	348	5.89E-52
Gene3D	G3DSA:1.10.601.10				103	247	6.1E-15
Gene3D	G3DSA:1.10.601.10				248	350	6.9E-47
Coils	Coil				485	505	-
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	412	503	3.74E-19
Pfam	PF03979	Sigma-70 factor, region 1.1	IPR007127	RNA polymerase sigma factor 70, region 1.1	17	67	8.1E-10
Pfam	PF00140	Sigma-70 factor, region 1.2	IPR009042	RNA polymerase sigma-70 region 1.2	105	136	7.9E-9
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	360	432	1.3E-13
Gene3D	G3DSA:1.10.220.120		IPR042189	Sigma-70 factor, region 1.1 superfamily	13	69	3.2E-10
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	326	334	2.7E-19
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	485	496	2.7E-19
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	279	348	5.4E-23
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	449	461	2.7E-19
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	351	425	4.8E-14
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	446	497	1.4E-12
ProSitePatterns	PS00715	Sigma-70 factors family signature 1.	IPR000943	RNA polymerase sigma-70	302	315	-
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	302	315	2.7E-19
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	427	511	4.0E-22
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	470	485	2.7E-19
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	351	422	6.54E-10
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	274	499	4.7E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.