Burkholderia vietnamiensis G4, Bcep1808_2896

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04963	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04963	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PS00717	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0001216	DNA-binding transcription activator activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PS00717	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bvi02020	Two-component system	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	401	413	5.0E-27
Pfam	PF04552	Sigma-54, DNA binding domain	IPR007634	RNA polymerase sigma factor 54, DNA-binding	344	499	9.0E-66
ProSitePatterns	PS00717	Sigma-54 factors family signature 1.	IPR000394	RNA polymerase sigma factor 54	389	408	-
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	212	229	5.0E-27
Pfam	PF04963	Sigma-54 factor, core binding domain	IPR007046	RNA polymerase sigma factor 54, core-binding domain	137	328	4.8E-58
PIRSF	PIRSF000774		IPR000394	RNA polymerase sigma factor 54	1	501	5.1E-157
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	475	493	5.0E-27
ProSitePatterns	PS00718	Sigma-54 factors family signature 2.	IPR000394	RNA polymerase sigma factor 54	480	487	-
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	417	428	5.0E-27
MobiDBLite	mobidb-lite	consensus disorder prediction			71	87	-
Gene3D	G3DSA:1.10.10.1330		IPR038709	RNA polymerase sigma-54 factor, core-binding domain superfamily	142	276	1.9E-20
Pfam	PF00309	Sigma-54 factor, Activator interacting domain (AID)	IPR000394	RNA polymerase sigma factor 54	4	48	2.3E-14
Gene3D	G3DSA:1.10.10.60				442	499	4.5E-22
MobiDBLite	mobidb-lite	consensus disorder prediction			71	98	-
ProSiteProfiles	PS50044	Sigma-54 factors family profile.			353	479	48.989
TIGRFAM	TIGR02395	rpoN_sigma: RNA polymerase sigma-54 factor	IPR000394	RNA polymerase sigma factor 54	9	499	4.3E-142

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.