Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | bvi02020 | Two-component system | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Gene3D | G3DSA:1.10.1740.10 | 1 | 83 | 1.2E-28 | |||
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 87 | 160 | 3.4E-15 | |
SUPERFAMILY | SSF88946 | IPR013325 | RNA polymerase sigma factor, region 2 | 3 | 86 | 3.92E-23 | |
Pfam | PF04539 | Sigma-70 region 3 | IPR007624 | RNA polymerase sigma-70 region 3 | 95 | 141 | 1.9E-10 |
CDD | cd06171 | Sigma70_r4 | 180 | 231 | 3.29093E-10 | ||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 65 | 73 | 1.4E-11 |
Hamap | MF_00962 | RNA polymerase sigma factor FliA [fliA]. | IPR028617 | RNA polymerase sigma factor FliA | 3 | 237 | 63.622 |
TIGRFAM | TIGR02937 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family | IPR014284 | RNA polymerase sigma-70 like domain | 13 | 234 | 4.9E-33 |
Gene3D | G3DSA:1.20.140.160 | 85 | 237 | 1.5E-44 | |||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 204 | 219 | 1.4E-11 |
ProSitePatterns | PS00715 | Sigma-70 factors family signature 1. | IPR000943 | RNA polymerase sigma-70 | 41 | 54 | - |
PIRSF | PIRSF000770 | IPR000943 | RNA polymerase sigma-70 | 1 | 239 | 1.6E-38 | |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 41 | 54 | 1.4E-11 |
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 152 | 238 | 2.06E-20 | |
Pfam | PF04545 | Sigma-70, region 4 | IPR007630 | RNA polymerase sigma-70 region 4 | 183 | 232 | 4.0E-15 |
ProSitePatterns | PS00716 | Sigma-70 factors family signature 2. | IPR000943 | RNA polymerase sigma-70 | 204 | 230 | - |
TIGRFAM | TIGR02479 | FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family | IPR012845 | RNA polymerase sigma factor, FliA/WhiG | 15 | 234 | 5.8E-87 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 219 | 230 | 1.4E-11 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 15 | 86 | 1.1E-15 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 187 | 199 | 1.4E-11 |