Burkholderia pseudomallei K96243, BPSS0145 (dbpA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 216 378 8.6E-42
CDD cd12501 RRM_EcDbpA_like 391 463 8.42996E-37
Gene3D G3DSA:3.30.70.330 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily 391 463 2.0E-20
SMART SM00490 IPR001650 Helicase, C-terminal 260 341 1.3E-25
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 77 355 9.43E-71
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650 Helicase, C-terminal 220 380 20.358
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 32 198 1.9E-47
ProSiteProfiles PS51195 DEAD-box RNA helicase Q motif profile. IPR014014 RNA helicase, DEAD-box type, Q motif 8 36 10.321
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001 Helicase superfamily 1/2, ATP-binding domain 39 210 33.144
ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site 156 164 -
CDD cd00268 DEADc 19 211 1.87591E-97
Coils Coil 85 105 -
CDD cd18787 SF2_C_DEAD 221 349 3.7391E-50
SMART SM00487 IPR014001 Helicase superfamily 1/2, ATP-binding domain 27 224 1.8E-58
Gene3D G3DSA:3.40.50.300 2 213 9.4E-74
Pfam PF03880 DbpA RNA binding domain IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain 391 461 3.3E-23
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 242 340 3.7E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.