Burkholderia pseudomallei K96243, BPSL2871 (secD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006886 intracellular protein transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01129
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01129
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps03060 Protein export 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps03070 Bacterial secretion system 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13721 SecD export protein N-terminal TM region IPR027398 SecD export protein N-terminal TM domain 1 112 7.8E-35
Gene3D G3DSA:1.20.1640.10 428 605 7.8E-11
Gene3D G3DSA:3.30.70.3400 231 427 3.3E-48
Hamap MF_01463_B Protein translocase subunit SecD [secD]. IPR005791 Protein translocase subunit SecD 2 609 47.538
Pfam PF07549 SecD/SecF GG Motif IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site 128 149 9.6E-6
MobiDBLite mobidb-lite consensus disorder prediction 621 674 -
Pfam PF02355 Protein export membrane protein IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial 428 598 1.7E-18
TIGRFAM TIGR01129 secD: protein-export membrane protein SecD IPR005791 Protein translocase subunit SecD 132 595 1.2E-133
SUPERFAMILY SSF82866 405 603 3.01E-38
Gene3D G3DSA:3.30.1360.200 289 426 3.3E-48
TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family IPR022645 Protein-export membrane protein SecD/SecF, bacterial 355 588 5.1E-68

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.