Burkholderia pseudomallei K96243, BPSL1874

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016070 RNA metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00358
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004518 nuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01895
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004518 nuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01895
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004540 ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00955
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00955
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00955
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004540 ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00955
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016070 RNA metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00358
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.140 690 787 1.5E-19
Coils Coil 841 844 -
Pfam PF17876 Cold shock domain IPR040476 RNase II/RNase R, cold shock domain 186 257 2.4E-23
Pfam PF08206 Ribonuclease B OB domain IPR013223 Ribonuclease B, N-terminal OB domain 108 165 1.8E-23
MobiDBLite mobidb-lite consensus disorder prediction 780 844 -
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 689 770 14.329
SMART SM00357 IPR011129 Cold shock domain 107 166 8.4E-13
Pfam PF00773 RNB domain IPR001900 Ribonuclease II/R 280 611 7.2E-104
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 689 769 2.34E-20
Hamap MF_01895 Ribonuclease R [rnr]. IPR011805 Ribonuclease R 59 770 56.325
ProSitePatterns PS01175 Ribonuclease II family signature. IPR022966 Ribonuclease II/R, conserved site 579 603 -
MobiDBLite mobidb-lite consensus disorder prediction 829 844 -
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 686 767 8.9E-11
CDD cd04471 S1_RNase_R 688 770 1.40204E-38
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 88 168 3.43E-19
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 207 687 3.43E-142
TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases IPR004476 Ribonuclease II/ribonuclease R 97 770 7.8E-213
Gene3D G3DSA:2.40.50.140 93 168 1.4E-19
SMART SM00316 IPR022967 RNA-binding domain, S1 687 770 2.1E-11
SMART SM00955 IPR001900 Ribonuclease II/R 280 612 9.3E-183
TIGRFAM TIGR02063 RNase_R: ribonuclease R IPR011805 Ribonuclease R 41 770 6.8E-250
SMART SM00316 IPR022967 RNA-binding domain, S1 101 163 11.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.