Burkholderia pseudomallei K96243, BPSL1495 (rho)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01884
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01884
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00357
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006353 DNA-templated transcription, termination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01884
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008186 RNA-dependent ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01884
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG (InterPro) 00190 Oxidative phosphorylation InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc ATP biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG (InterPro) 00195 Photosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 160 363 9.0E-22
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 49 125 1.83E-28
SUPERFAMILY SSF68912 IPR036269 Rho termination factor, N-terminal domain superfamily 1 46 1.96E-12
Gene3D G3DSA:1.10.720.10 1 46 3.6E-20
TIGRFAM TIGR00767 rho: transcription termination factor Rho IPR004665 Transcription termination factor Rho 2 417 2.0E-209
Hamap MF_01884 Transcription termination factor Rho [rho]. IPR004665 Transcription termination factor Rho 1 419 242.914
CDD cd01128 rho_factor IPR041703 Transcription termination factor Rho, ATP binding domain 156 404 4.51909E-173
Gene3D G3DSA:2.40.50.140 47 123 3.3E-33
SMART SM00382 IPR003593 AAA+ ATPase domain 170 349 2.5E-6
SMART SM00959 IPR011112 Rho termination factor, N-terminal 5 47 2.5E-17
SMART SM00357 IPR011129 Cold shock domain 52 118 2.3E-17
Gene3D G3DSA:3.40.50.300 130 417 9.2E-128
Pfam PF07498 Rho termination factor, N-terminal domain IPR011112 Rho termination factor, N-terminal 5 47 3.6E-16
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 90 371 7.57E-68
CDD cd04459 Rho_CSD IPR011113 Rho termination factor, RNA-binding domain 51 118 2.47957E-39
Pfam PF07497 Rho termination factor, RNA-binding domain IPR011113 Rho termination factor, RNA-binding domain 52 125 5.8E-31
ProSiteProfiles PS51856 Rho RNA-binding domain profile. 48 123 30.616

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.