Burkholderia pseudomallei K96243, BPSL0074 (dnaN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02768
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00663
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02768
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009360 DNA polymerase III complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00663
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00663
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps00240 Pyrimidine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps00230 Purine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps03430 Mismatch repair 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps03030 DNA replication 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps03440 Homologous recombination 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps01100 Metabolic pathways 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55979 129 245 6.28E-28
SMART SM00480 IPR001001 DNA polymerase III, beta sliding clamp 18 363 4.3E-107
Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain IPR022635 DNA polymerase III, beta sliding clamp, C-terminal 247 366 2.6E-32
TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit IPR001001 DNA polymerase III, beta sliding clamp 6 366 2.3E-95
Gene3D G3DSA:3.70.10.10 139 365 1.4E-110
PIRSF PIRSF000804 IPR001001 DNA polymerase III, beta sliding clamp 1 367 8.9E-113
Pfam PF02767 DNA polymerase III beta subunit, central domain IPR022637 DNA polymerase III, beta sliding clamp, central 131 244 1.7E-33
Gene3D G3DSA:3.10.150.10 5 243 1.4E-110
Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain IPR022634 DNA polymerase III, beta sliding clamp, N-terminal 6 119 4.5E-27
Coils Coil 367 367 -
SUPERFAMILY SSF55979 246 367 1.79E-35
SUPERFAMILY SSF55979 5 119 7.42E-21
CDD cd00140 beta_clamp IPR001001 DNA polymerase III, beta sliding clamp 4 366 4.55646E-149

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.