Burkholderia cenocepacia AU 1054, BCEN_RS28750

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 2 81 6.31E-22
SUPERFAMILY SSF53850 93 293 5.43E-40
Gene3D G3DSA:3.40.190.10 163 262 9.0E-55
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 92 291 1.3E-41
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like 95 288 1.78083E-67
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 23 34 4.3E-5
Gene3D G3DSA:3.40.190.10 103 288 9.0E-55
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 6 63 29.783
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 7 97 5.6E-22
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 34 44 4.3E-5
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 67 1.0E-21
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 44 55 4.3E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.