Burkholderia cenocepacia AU 1054, BCEN_RS15905
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF47413 | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 3 | 71 | 3.38E-15 | |
| ProSiteProfiles | PS50943 | Cro/C1-type HTH domain profile. | IPR001387 | Cro/C1-type helix-turn-helix domain | 9 | 64 | 14.845 |
| Gene3D | G3DSA:1.10.260.40 | 5 | 107 | 5.0E-18 | |||
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 6 | 64 | 1.27165E-11 |
| Coils | Coil | 6 | 26 | - | |||
| Pfam | PF01381 | Helix-turn-helix | IPR001387 | Cro/C1-type helix-turn-helix domain | 9 | 64 | 7.6E-11 |
| SMART | SM00530 | IPR001387 | Cro/C1-type helix-turn-helix domain | 8 | 64 | 1.8E-10 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.