Burkholderia cenocepacia AU 1054, BCEN_RS11640

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 24 35 2.7E-9
SUPERFAMILY SSF53850 101 302 9.23E-38
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 8 97 1.4E-20
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 7 64 27.983
Gene3D G3DSA:3.40.190.10 109 295 5.3E-50
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 5 86 5.08E-21
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 45 56 2.7E-9
Gene3D G3DSA:3.40.190.10 170 268 5.3E-50
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 101 299 1.6E-35
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 35 45 2.7E-9
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like 101 295 5.3527E-63
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 9 67 7.9E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.