Burkholderia cenocepacia AU 1054, BCEN_RS11335

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like 96 288 4.76042E-75
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 292 3.7E-38
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 45 56 6.2E-8
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 8 97 7.4E-23
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 9 67 2.2E-21
Gene3D G3DSA:3.40.190.10 164 261 1.5E-53
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 35 45 6.2E-8
Gene3D G3DSA:3.40.190.10 104 288 1.5E-53
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 24 35 6.2E-8
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 64 30.092
SUPERFAMILY SSF53850 94 295 3.08E-41
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 6 88 2.31E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.