Burkholderia cenocepacia AU 1054, BCEN_RS10345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF07883 | Cupin domain | IPR013096 | Cupin 2, conserved barrel | 149 | 205 | 1.8E-8 |
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 36 | 93 | 1.53581E-13 |
| Gene3D | G3DSA:1.10.260.40 | 27 | 100 | 3.8E-17 | |||
| SUPERFAMILY | SSF47413 | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 33 | 95 | 1.91E-15 | |
| Pfam | PF01381 | Helix-turn-helix | IPR001387 | Cro/C1-type helix-turn-helix domain | 39 | 91 | 1.3E-11 |
| SUPERFAMILY | SSF51182 | IPR011051 | RmlC-like cupin domain superfamily | 78 | 212 | 1.39E-16 | |
| ProSiteProfiles | PS50943 | Cro/C1-type HTH domain profile. | IPR001387 | Cro/C1-type helix-turn-helix domain | 39 | 93 | 15.619 |
| SMART | SM00530 | IPR001387 | Cro/C1-type helix-turn-helix domain | 38 | 93 | 2.8E-13 | |
| Gene3D | G3DSA:2.60.120.10 | IPR014710 | RmlC-like jelly roll fold | 121 | 213 | 2.4E-14 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.