Burkholderia cenocepacia AU 1054, BCEN_RS05265

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00357	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0016070	RNA metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00358	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004540	ribonuclease activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00773	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004518	nuclease activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02063	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003723	RNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02063	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
TIGRFAM	TIGR02063	RNase_R: ribonuclease R	IPR011805	Ribonuclease R	9	738	8.4E-252
SUPERFAMILY	SSF50249		IPR012340	Nucleic acid-binding, OB-fold	175	655	3.14E-143
SMART	SM00316		IPR022967	RNA-binding domain, S1	655	738	1.5E-11
TIGRFAM	TIGR00358	3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases	IPR004476	Ribonuclease II/ribonuclease R	65	738	6.9E-212
SMART	SM00316		IPR022967	RNA-binding domain, S1	69	131	13.0
Pfam	PF00773	RNB domain	IPR001900	Ribonuclease II/R	248	579	2.9E-105
ProSiteProfiles	PS50126	S1 domain profile.	IPR003029	S1 domain	657	738	14.599
Pfam	PF17876	Cold shock domain	IPR040476	RNase II/RNase R, cold shock domain	154	226	7.3E-24
ProSitePatterns	PS01175	Ribonuclease II family signature.	IPR022966	Ribonuclease II/R, conserved site	547	571	-
Pfam	PF00575	S1 RNA binding domain	IPR003029	S1 domain	654	735	6.6E-11
SMART	SM00357		IPR011129	Cold shock domain	75	134	6.0E-13
SUPERFAMILY	SSF50249		IPR012340	Nucleic acid-binding, OB-fold	657	737	2.5E-20
CDD	cd04471	S1_RNase_R			656	738	1.05621E-38
MobiDBLite	mobidb-lite	consensus disorder prediction			743	827	-
Gene3D	G3DSA:2.40.50.140				658	751	9.6E-20
Pfam	PF08206	Ribonuclease B OB domain	IPR013223	Ribonuclease B, N-terminal OB domain	76	133	2.9E-23
Hamap	MF_01895	Ribonuclease R [rnr].	IPR011805	Ribonuclease R	27	738	57.071
Coils	Coil				820	827	-
SUPERFAMILY	SSF50249		IPR012340	Nucleic acid-binding, OB-fold	56	136	2.21E-19
SMART	SM00955		IPR001900	Ribonuclease II/R	248	580	5.5E-187
Gene3D	G3DSA:2.40.50.140				61	137	1.9E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.