Burkholderia cenocepacia AU 1054, BCEN_RS05030 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01509
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09157
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09157
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09157
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09157
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase IPR014780 tRNA pseudouridine synthase II, TruB 17 224 5.1E-80
CDD cd02573 PseudoU_synth_EcTruB IPR014780 tRNA pseudouridine synthase II, TruB 18 227 4.25784E-123
Gene3D G3DSA:3.30.2350.10 7 250 3.0E-93
Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) IPR002501 Pseudouridine synthase II, N-terminal 38 185 1.7E-58
Pfam PF09157 Pseudouridine synthase II TruB, C-terminal IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal 247 306 8.4E-16
Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain IPR032819 tRNA pseudouridylate synthase B, C-terminal 186 243 1.1E-17
SUPERFAMILY SSF55120 IPR020103 Pseudouridine synthase, catalytic domain superfamily 15 246 2.04E-82
SUPERFAMILY SSF88697 IPR015947 PUA-like superfamily 246 307 2.73E-7
Hamap MF_01080 tRNA pseudouridine synthase B [truB]. IPR014780 tRNA pseudouridine synthase II, TruB 16 306 19.505

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.