Burkholderia cenocepacia AU 1054, BCEN_RS04930

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00380
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00380
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00216
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. IPR020816 Histone-like DNA-binding protein, conserved site 80 99 -
Gene3D G3DSA:4.10.520.10 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 34 128 2.2E-35
CDD cd13835 IHF_A IPR005684 Integration host factor, alpha subunit 36 123 5.05033E-52
Hamap MF_00380 Integration host factor subunit alpha [ihfA]. IPR005684 Integration host factor, alpha subunit 33 128 29.607
SMART SM00411 IPR000119 Histone-like DNA-binding protein 35 124 8.2E-42
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 108 122 2.9E-13
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 92 105 2.9E-13
SUPERFAMILY SSF47729 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 35 125 1.32E-31
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 74 89 2.9E-13
MobiDBLite mobidb-lite consensus disorder prediction 1 33 -
TIGRFAM TIGR00987 himA: integration host factor, alpha subunit IPR005684 Integration host factor, alpha subunit 34 126 4.1E-44
Pfam PF00216 Bacterial DNA-binding protein IPR000119 Histone-like DNA-binding protein 35 123 5.1E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.