Burkholderia cenocepacia AU 1054, BCEN_RS03130

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01129
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01129
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01129
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01129
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55174 28 79 1.62E-7
CDD cd02869 PseudoU_synth_RluCD_like IPR006145 Pseudouridine synthase, RsuA/RluA 109 301 6.16125E-62
Gene3D G3DSA:3.30.2350.10 101 330 3.1E-74
CDD cd00165 S4 IPR002942 RNA-binding S4 domain 29 112 3.83945E-6
TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family IPR006225 Pseudouridine synthase, RluC/RluD 25 327 7.2E-80
ProSiteProfiles PS50889 S4 RNA-binding domain profile. IPR002942 RNA-binding S4 domain 29 83 10.959
SMART SM00363 IPR002942 RNA-binding S4 domain 29 88 5.2E-6
ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. IPR006224 Pseudouridine synthase, RluC/RluD, conserved site 147 161 -
Gene3D G3DSA:3.10.290.10 IPR036986 RNA-binding S4 domain superfamily 17 80 1.8E-13
SUPERFAMILY SSF55120 IPR020103 Pseudouridine synthase, catalytic domain superfamily 94 328 8.48E-63
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 29 75 6.9E-7
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA 109 260 1.4E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.