Burkholderia lata 383, BCEP18194_RS35610 (rpfR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 99 230 2.3E-11
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 108 163 10.715
Pfam PF00563 EAL domain IPR001633 EAL domain 414 647 2.0E-75
Gene3D G3DSA:3.30.70.270 231 409 5.2E-55
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 414 660 3.4E-91
CDD cd01949 GGDEF IPR000160 GGDEF domain 237 395 6.53832E-55
SMART SM00267 IPR000160 GGDEF domain 225 397 3.7E-55
CDD cd01948 EAL IPR001633 EAL domain 413 652 2.34511E-108
Pfam PF00989 PAS fold IPR013767 PAS fold 114 212 6.0E-5
SMART SM00052 IPR001633 EAL domain 407 652 1.5E-116
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 123 233 8.86E-12
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 233 396 5.5E-35
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 408 661 80.317
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 241 398 2.49E-44
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 410 665 6.6E-101
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 236 392 2.6E-43
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 267 399 32.638
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 114 232 2.4E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.